Hello, Rex,
I think that Topp program could be useful for you in terms of
structures comparison. It will give to you rsmd and distances
between corresponding residues.
01.04.2013 18:07, Rex Palmer пишет:
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We have two refined protein structures of similar
proteins. There are differences in the amino acid sequences
however and also in the bound waters and ligands.
Does anyone know of a program which
we could use in order to quantify the structural differences
associated with these factors?
--
Eugene Osipov
Junior Research Scientist
Laboratory of Enzyme Engineering
A.N. Bach Institute of Biochemistry
Russian Academy of Sciences
Leninsky pr. 33, 119071 Moscow, Russia
e-mail: [log in to unmask]
