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FSL can read .img/.hdr files for most of its functions. If you need to convert them you can use fslchfiletype Best Regards, Donald McLaren ================= D.G. McLaren, Ph.D. Research Fellow, Department of Neurology, Massachusetts General Hospital and Harvard Medical School Postdoctoral Research Fellow, GRECC, Bedford VA Website: http://www.martinos.org/~mclaren Office: (773) 406-2464 ===================== This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is intended only for the use of the individual or entity named above. If the reader of the e-mail is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that you are in possession of confidential and privileged information. Any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited and may be unlawful. If you have received this e-mail unintentionally, please immediately notify the sender via telephone at (773) 406-2464 or email. On Mon, Mar 18, 2013 at 11:08 AM, Jie Yu <[log in to unmask]> wrote: > Hi > I tried to use the significant blobs from my SPM result image as a mask, > and multiply the mask with individual images, and finally I need to find > out the gray matter volumes of these individual masked images.... > But I only know this method in FSL, so... > Is there any way to export SPM result to a nii image file? > If not, how can I complete this task in SPM? > Thanks a lot! >