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Hi - type fslcc to see the usage - you might find it helpful to reduce the default threshold for reported matching correlated pairs. Cheers. On 23 Mar 2013, at 15:45, J. Kabagema wrote: > Thanks, > > After doing a new registration of the two files, a new fslcc was executed. > The command was executed, no error reported but also no output. > ….. fslcc TemplatePNAS.nii MelodicCorrected.nii > 1 1 0.13 > > Any suggestion about what I can do to correct this. > > Thanks in advance, > Jean-Claude > > From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Mark Jenkinson > Sent: Saturday, March 23, 2013 8:28 AM > To: [log in to unmask] > Subject: Re: [FSL] Mapping Resting-state results to Beckman templates > > Hi, > > You need to make sure the two files are registered/aligned (i.e. in the same space). > So you may need to resample your images to achieve this. > See details in the FSL wiki or in the FSL Course tutorials and lectures (especially on registration). > > All the best, > Mark > > > On 21 Mar 2013, at 18:25, J. Kabagema <[log in to unmask]> wrote: > > > Hi, > > Using < fslcc PNAS_Smith09_rsn10.nii melodic._IC.nii > > I’m getting the following: > Error: Mismatch in image dimensions > > Any idea on what is going wrong and how I can correct this? > > Thanks in advance, > Jean-Claude > From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Michael Harms > Sent: Tuesday, March 19, 2013 11:22 PM > To: [log in to unmask] > Subject: Re: [FSL] Mapping Resting-state results to Beckman templates > > > In essence, it vectorizes each of the two inputs (using all voxels, including non-brain 0's) and computes the correlation between the two. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: [log in to unmask] > > From: "J. Kabagema" <[log in to unmask]> > Reply-To: FSL - FMRIB's Software Library <[log in to unmask]> > Date: Tuesday, March 19, 2013 4:51 PM > To: FSL - FMRIB's Software Library <[log in to unmask]> > Subject: Re: [FSL] Mapping Resting-state results to Beckman templates > > Thanks, > Any documentation about how fslcc works? > Best regards, > Jean-Claude > From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Rosalia Dacosta Aguayo [[log in to unmask]] > Sent: Tuesday, March 19, 2013 10:32 PM > To: [log in to unmask] > Subject: Re: [FSL] Mapping Resting-state results to Beckman templates > > Hi, > Crosscorrelation....fslcc > Hope this helps. > Best regards, > Rosalia. > El 19/03/2013 22:19, "Jean-Claude Kabagema" <[log in to unmask]> escribió: > Dear FSL Experts, > > I have run MELODIC on Resting-states data and I would like to map the individual results to Beckman templates. > Can anyone indicates me the best tool in FSL that can help me to achieve this? > > Thanks in advance, > Jean-Claude > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------