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I've looked on the list and it seems this problem has come up before and was possibly a python issue? Try updating to the most recent version of FSL and see if that helps. There were 2-3 patches after 5.0.0 was released and FSL runs much more smoothly with the latest version in my experience. Cheers, Jeanette On Wed, Mar 20, 2013 at 8:52 AM, carole menuel <[log in to unmask]> wrote: > Hi > > Thanks for your response > i am running dual_regression where my directory is located > Documents/dualregressionextreme > > dual_regression groupmelodic.ica/melodic_IC.nii.gz 1 design.mat design.con > 5000 dualregressionoutput2 dualregressioninput/sub3.nii.gz > dualregressioninput/sub5.nii.gz dualregressioninput/sub6.nii.gz > dualregressioninput/sub10.nii.gz dualregressioninput/sub11.nii.gz > dualregressioninput/sub13.nii.gz dualregressioninput/sub16.nii.gz > dualregressioninput/sub19.nii.gz dualregressioninput/sub20.nii.gz > dualregressioninput/sub21.nii.gz dualregressioninput/sub26.nii.gz > dualregressioninput/sub29.nii.gz dualregressioninput/sub31.nii.gz > dualregressioninput/sub38.nii.gz dualregressioninput/sub43.nii.gz > dualregressioninput/sub44.nii.gz dualregressioninput/sub47.nii.gz > dualregressioninput/tem1.nii.gz dualregressioninput/tem2.nii.gz > dualregressioninput/tem3.nii.gz dualregressioninput/tem4.nii.gz > dualregressioninput/tem5.nii.gz dualregressioninput/tem6.nii.gz > dualregressioninput/tem7.nii.gz dualregressioninput/tem8.nii.gz > dualregressioninput/tem9.nii.gz dualregressioninput/tem10.nii.gz > dualregressioninput/tem11.nii.gz dualregressioninput/tem12.nii.gz > dualregressioninput/tem13.nii.gz dualregressioninput/tem14.nii.gz > dualregressioninput/tem16.nii.gz dualregressioninput/tem17.nii.gz > dualregressioninput/tem18.nii.gz dualregressioninput/tem19.nii.gz > dualregressioninput/tem20.nii.gz dualregressioninput/tem21.nii.gz > dualregressioninput/tem22.nii.gz dualregressioninput/tem23.nii.gz > dualregressioninput/tem25.nii.gz dualregressioninput/tem26.nii.gz > dualregressioninput/tem27.nii.gz dualregressioninput/tem28.nii.gz > dualregressioninput/tem29.nii.gz dualregressioninput/tem30.nii.gz > > caro > ------------------------------ > *De :* Jeanette Mumford <[log in to unmask]> > *À :* [log in to unmask] > *Envoyé le :* Mercredi 20 mars 2013 14h34 > > *Objet :* Re: [FSL] Aw: Re: [FSL] dual regression > > Hi, > > Looks like your design.grp has the correct number of lines, so I'm > assuming the design.mat does (I think you pasted the wrong file, but that's > okay I don't need to see your design.mat). > > Does .filelist have the correct number of lines in it? 45. > > Although it may not matter (depending on where you're running the command > from), it may help to type out the full path to the files you're calling in > dual_regression. > > Jeanette > > > On Wed, Mar 20, 2013 at 8:01 AM, carole menuel <[log in to unmask]> wrote: > > FSL version 5.0.0 > dual_regression groupICA.gica/groupmelodic.ica/melodic_IC > 1 design.mat design.con 5000 output `cat groupICA.gica/.filelist` > thanks > Carole > ------------------------------ > *De :* Rosalia Dacosta Aguayo <[log in to unmask]> > *À :* [log in to unmask] > *Envoyé le :* Mercredi 20 mars 2013 12h13 > > *Objet :* Re: [FSL] Aw: Re: [FSL] dual regression > > Hi, > Which FSL version are you using? > Which command line are you using? > Rosalia. > El 20/03/2013 12:07, "carole menuel" <[log in to unmask]> escribió: > > dear rosalia > i haven't used another computer my matrix and all my input data are in the > same directory so i don't understand the problem of path... > > > ------------------------------ > *De :* Rosalia Dacosta Aguayo <[log in to unmask]> > *À :* [log in to unmask] > *Envoyé le :* Mercredi 20 mars 2013 12h04 > *Objet :* Re: [FSL] Aw: Re: [FSL] dual regression > > Hi, > I run melodic in one computer. Then, I copied all the output files to > another computer to run dual regression. The problem is that the .filelist > file had the path from the first computer and, therefore, I was having the > same problems for running dual regression script. > Rosalia. > El 20/03/2013 11:58, "Lysiann Kalmbach" <[log in to unmask]> escribió: > > > Dear Rosalia, thank for your fast answer. What do you mean with you > changed to PC- I think everything should be fine there :/ > *Gesendet:* Mittwoch, 20. März 2013 um 11:48 Uhr > *Von:* "Rosalia Dacosta Aguayo" <[log in to unmask]> > *An:* [log in to unmask] > *Betreff:* Re: [FSL] dual regression > Hi, > I had the same error. Be sure that the .filelist has the correct PATH. I > changed of pc and I forgot this and I had problems. > Hope this helps. > Rosalia. > El 20/03/2013 11:10, "carole menuel" <[log in to unmask]> escribió: > > Hi Jeanette > > i send you my design matrix because I don't understand my problem perhaps > you can find it > thanks for your help > Carole > > design.con > /ContrastName1 group A > group B > /ContrastName2 group B > group A > /ContrastName3 group A mean > /ContrastName4 group B mean > /NumWaves 2 > /NumContrasts 4 > /PPheights 1.000000e+00 1.000000e+00 1.000000e+00 > 1.000000e+00 > /RequiredEffect 1.287 1.287 1.015 0.791 > > /Matrix > 1.000000e+00 -1.000000e+00 > -1.000000e+00 1.000000e+00 > 1.000000e+00 0.000000e+00 > 0.000000e+00 1.000000e+00 > > design.grp > > /NumWaves 1 > /NumPoints 45 > > /Matrix > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 1 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > 2 > > ------------------------------ > *De :* Jeanette Mumford <[log in to unmask]<http:[log in to unmask]> > > > *À :* [log in to unmask] <http:[log in to unmask]> > *Envoyé le :* Mardi 19 mars 2013 16h01 > *Objet :* Re: [FSL] dual regression > > Sorry, I missed your second error: > numbers of rows in design matrix doesn't match number of "time point" in > input data! > > You need to be sure the design matrix you are inputting has exactly the > same number of rows as the number of data sets you are inputting into the > dual regression script. Sounds like you have 45 subjects, so be sure your > design matrix has 45 rows and you are inputting exactly 45 data sets. > > Cheers, > Jeanette > > On Tue, Mar 19, 2013 at 9:46 AM, SUBSCRIBE FSL caro <[log in to unmask]>wrote: > > Hi jeanette > Thanks for your response but my software works correctly so i think is not > a problem of path because i already check it. Have you an other idea ? > For the design matrix problem have you a suggestion! > Thanks > Caro > > > > > > > > > > > > > >