Hi Anja again,
I've just written a script (attached) hopefully doing what you're after. Just call it from a command line:
./areg.sh x
x: name of your 4D image; e.g. filtered_func_data;
outputs: reg_x image + split volumes which are moved to VOL directory whichthe script creates in your working dir (similalrly reg_ volums are moved to REGG dir).
Mind: it's a beta version; tested only once. If you have any problems/questions please let me know.
Good luck,
Iwo
Hi,
I am trying to register my filtered_func data by using a flirt command line in the working space. I have noticed that this line only works by registering on volume-by-volume basis, which means I need to run it for every single volume in my functional data. Is there a quicker way to register
filtered_func data by normalising all the volumes at once?
Thanks very much,
Anja