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Yes, I found this too. It works, but only with simple things. Now I need to get FEAT working on Slurm and this is not enough for FEAT as it does not consider the relationships between computing tasks. It just fires everything once (as it is noted there). In FEAT there is multiple stages which needs to be computed in certain order and so tasks must wait that all earlier stage tasks have finished successfully before it can be started. I try to generate FEAT compatilbe version of fsl_sub for Slurm and will inform here if I succeed. ( Of course, if someone already has something like that I would like to know it) -- Juha Pajula, Researcher, Ph.D. Student, Methods and Models for Biological Signals and Images group of Signal Processing department in Tampere University of Technology, Finland On 03/25/13 21:00, Connolly, Colm wrote: > Hi, > > This link may help you in your efforts to get fsl_sub working with slurm > > http://www.tchpc.tcd.ie/node/439 > > > On Mar 23, 2013, at 12:53 AM, Mark Jenkinson > <[log in to unmask] <mailto:[log in to unmask]>> > wrote: > >> Hi, >> >> We don't have any experience using Slurm in Oxford but maybe someone >> else on the list does. >> As for CUDA, the current release doesn't support this but we do have >> CUDA code running in-house at the moment and are intending to release >> this quite soon. >> >> All the best, >> Mark >> >> >> On 22 Mar 2013, at 07:52, Juha Pajula <[log in to unmask] >> <mailto:[log in to unmask]>> wrote: >> >>> Hi! >>> >>> Our university set up a new computing cluster recently and in this new >>> system the parallel resource management is based on Slurm >>> (https://computing.llnl.gov/linux/slurm/) >>> >>> I am currently setting up the FSL to the cluster and it seems to work >>> now fine in a single node. For the real analysis work I need the >>> parallel abilities of FLS and for this reason I have to modify the >>> fsl_sub for the slurm environment. >>> >>> Do you have any experience how to modify the fsl_sub for Slurm? I didn't >>> found any notes about Slurm from FSL webpage. >>> >>> >>> As a minor question: Does FSL support CUDA computations? >>> >>> >>> >>> -- >>> Juha Pajula, >>> Researcher, Ph.D. Student, >>> Methods and Models for Biological Signals and Images group of Signal >>> Processing department in Tampere University of Technology, >>> Finland > > Regards, > -- > Colm G. Connolly, Ph. D. > Dept of Psychiatry > University of California, San Francisco > 401 Parnassus Avenue, > San Francisco, CA 94143 >