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Not quite. You'll first want to normalize each input (e.g., /data/sub1/run1/filtered_func_data.ica/filtered_func_data.nii.gz) with FLIRT or FNIRT. Then you'll make a list of the resulting files. David On Feb 10, 2013, at 11:20 PM, Stephanie wrote: > I'm trying to run the following cmd on ICA data (already run through > Feat) to concatenate multiple runs across multiple subjects. > melodic -i list_of_funcs.txt -o output.ica -v --nobet --tr=2 --report > --guireport=./report.html -d 25 --mmthresh=0.5 --Ostats -a concat > > My question is on the list_of_funcs.txt. I understand that I should > list all the input files in an ascii text file (one input per line). > So would the following format make sense? > sub1/run1/filtered_func_data.ica > sub1/run2/filtered_func_data.ica > sub2/run1/filtered_func_data.ica > sub2/run2/filtered_func_data.ica -------------------------------------------- David V. Smith, Ph.D. Postdoctoral Fellow, Delgado Lab Department of Psychology Rutgers University Newark, NJ 07102 --------------------------------------------