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Dear Xavier, We have put redirects in place for the PDBe download links use in Coot. e.g. http://www.ebi.ac.uk/msd-srv/oca/oca-bin/save-pdb?id=4AW6 now redirects to www.ebi.ac.uk/pdbe-srv/view/files/4aw6.ent You should be able to download PDB files without any problems. Best regards, Gary. On 07/02/2013 11:06, Sameer Velankar wrote: > > > -------- Original Message -------- > Subject: [ccp4bb] COOT v. 0.7 > Date: Wed, 6 Feb 2013 13:37:31 +0100 > From: "F.Xavier Gomis-Rüth" <[log in to unmask]> > Reply-To: [log in to unmask] > To: [log in to unmask] > > > > Dear CCP4ers, > > We managed to install COOT version 0.7 on a MacBookPro Retina with Mountain Lion > and there seems to be an issue that did not appear with the Linux version when > trying to retrieve coordinates directly from the PDB by givin the code: > > (get-ebi-pdb "4aw6") > DEBUG:: in get-url-str: "4aw6" > "http://www.ebi.ac.uk/msd-srv/oca/oca-bin/save-pdb?id=4AW6" pdb > (handle-read-draw-molecule-with-recentre "coot-download/4aw6.pdb" 1) > Reading coordinate file: coot-download/4aw6.pdb > There was an error reading coot-download/4aw6.pdb. > ERROR 20 READ: Attempt to read unknown-type file. > No Spacegroup found for this PDB file > Cell: 1 1 1 90 90 90 > There was a coordinates read error > > Any hints on how to circumvent this? > Best wishes, > Xavier > -- > -- Gary Battle Outreach Coordinator Protein Data Bank in Europe (PDBe) EMBL-EBI Wellcome Trust Genome Campus Hinxton, Cambridge CB10 1SD Tel: 01223 49-4654 email: [log in to unmask] http://www.facebook.com/proteindatabank http://twitter.com/PDBeurope