Hi,

I think the more convenient way to install packages required for FSL is to use the Synaptic package manager (in the top panel in the system->Administration menu). Search in this GUI fo fsl and select all required packages. Make sure to have the atlases installed as well. (you also can run 'aptitude install fsl').

I am not sure, if you need to source the configuration script on NeuroDebian as well, if so, you have to add the following line to the ~/.bashrc file:. /etc/fsl/5.0/fsl.sh

Check also http://neuro.debian.net/debian/extracts/fsl/README.Debian

hope this helps,
wolf

On 01/31/2013 03:01 PM, Sandra Petris wrote:

Hi Wolf,

thanks for your help. I did install the vm (Virtual MAchine of NeuroDebian) following your suggestion and I downloaded fsl 4.1 (it was somehow preconfigured to dowload it). Even if I can open the gui from the terminal and visualize images with fslview, I cannot use the TBSS scripts (I need to run TBSS analysis). For example if I run the  " tbss_1_preproc *nii.gz" and I am in the folder where the Fa images are, the terminal says that the command is not found.......

do you know what might be going on?

thanks a lot

ciao

sandra

2013/1/31 wolf zinke <[log in to unmask]>

Hi,

Are you running Windows?

You can use the Virtual MAchine of NeuroDebian (http://neuro.debian.net/vm.html#chap-vm), which runs with Virtualbox.

Good luck,
wolf

On 01/31/2013 10:56 AM, Sandra Petris wrote:

Dear Fsl experts,

I have a lenovo Intel Pentium CPU B960 2.20 GHz and 4 GB of RAM with no virtualization technology supported therefore I cannot install the VMware Player and Fsl vm.....I'm quite desperate.. is there any other way to install fsl efficiently on this kind of PC or it is not powerful enough?

Thanks a lot and any advice will be greatly appreaciated

Cheers

sandra