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Hi,

we have two groups with a covariate of interest and want to test the group*cov interaction effect in FEAT.
As far as I can tell, there are two ways to do that in FSL:

1)

intercept 	GroupA-B 	covar 	group*covar 	
1 	-1 	-3 	3 	

1 	-1 	-2 	2 	

1 	1 	1 	1 	

1 	1 	4 	4 	

	
with the following interaction-testing contrast:

intercept 	GroupA-B 	covar 	group*covar 	F-test
contrast 	0 	0 	0 	1 	x

which has the disadvantage that I can't model separate variances. So I could also do:

2)

groupA 	groupB 	covarA 	covarB 	
1 	0 	-3 	0 	

1 	0 	-2 	0 	

0 	1 	0 	1 	

0 	1 	0 	4 	

	
with the following contrast:

groupA 	groupB 	covarA 	covarB 	F-test
contrast1 	0 	0 	-1 	0 	x
contrast2 	0 	0 	0 	1 	x

However, we are not too sure about the F-test in 2). Maybe it should be just:

groupA 	groupB 	covarA 	covarB 	F-test
contrast1 	0 	0 	-1 	1 	x

Which one is correctly testing for the group*covariate interaction effect?
And would you expect the 1) and 2) model results to differ and if so, which model would you prefer (and why)?

Thanks for your help,

Esther