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Thanks Sir, It worked On Tue, Jan 15, 2013 at 2:12 PM, Christian F. Beckmann < [log in to unmask]> wrote: > Are these results generated from group ICA? If so, they are already in > MNI152, though potentially at a different voxel size (if you left the > 'resampling resolution' in the melodic GUI at default). In this case simply > run > > flirt -in melodic_IC -ref $FSLDIR/data/standard/MNI152_T1_2mm \ -out > melodic_IC_hr -applyisoxfm 2 -init > > to initialise flirt using the identity matrix (files will not be > transformed) and get a resampling into 2mm isotropic MNI152. > > hth > Christian > > > On 21 Dec 2012, at 06:48, Himanshu Joshi <[log in to unmask]> wrote: > > > Thanks of your reply, > > But even for running a linear registration to standard space also > follows the same pattern (see attached image) > > > > and regarding apply wrap application if I applywrap on MNIstandard > template using this command. > > applywarp -i $FSLDIR/data/standard/MNI152_T1_2mm -r example_func \ > --premat=std2exfunc.mat -o lowresmask -d float > > > > Can I be able to overlap melodic_IC file on the wrapped image I dont > think so? > > > > > > Please provide the hint to write the command line to proceed > > > > On Fri, Dec 21, 2012 at 5:42 AM, Mark Jenkinson < > [log in to unmask]> wrote: > > Hi, > > > > Did you run nonlinear registration to standard space? > > If so then you need to use applywarp and the warp outputs to do the > transformation. > > > > All the best, > > Mark > > > > > > > > On 19 Dec 2012, at 11:00, Himanshu Joshi <[log in to unmask]> wrote: > > > >> Dear FSL experts, > >> > >> I had tried using this command > >> flirt -in melodic_IC -ref $FSLDIR/data/standard/MNI152_T1_2mm \ -out > melodic_IC_hr -applyxfm -init ../reg/example_func2standard.mat > >> There is a change in field of view in melodic_hr file. > >> > >> > >> and the activations in the file (melodic_hr)seems to be shifted towards > left after application of the above mentioned command they are not > overlapping to standard template MNI152_T1_2mm > >> > >> If I apply same command to standard template the activations in > melodic_hr file exactly matches but the FOV of standard template also > changes and the axial and coronal images seems to be cut of a little > because of modified FOV > >> > >> If you can please suggest some solution to the problem > >> > >> -- > >> Himanshu Joshi > >> > > > > > > > > > > -- > > Himanshu Joshi > > M.Tech. Cognitive & Neuroscience. > > Senior Research Fellow > > Department of Psychiatry > > NIMHANS, Bangalore > > > > http://mbial.weebly.com/himanshu-joshi.html > > <melodicfile.jpg> > -- *Himanshu Joshi* M.Tech. Cognitive & Neuroscience. Senior Research Fellow Department of Psychiatry NIMHANS, Bangalore http://mbial.weebly.com/himanshu-joshi.html