On 08/01/13 12:27, "ing. Jan Stránský" wrote: > Hi everybody, > I think, I have some problem with JLigand. Recently on CCP4-weekend's > lunch bytes I saw in Bernhard's (or Paul's) JLigand window one extra > toolbar (see my window in attachment). I remember ther was icon with > "+" to show close contacts of ligand and button for direct sending of > ligand to coot (or to update it). I have JLigand 1.0.37 and coot 0.7 > runing under Fedora. > Where is the problem? Hello (again) Jan, We suspect that you are remembering the "+" environment button in the Lidia window (to get a better analysis of the interactions, you should hydrogenate region first (this needs molprobity probe)). Regards, Paul and Bernard.