I got that error blurb too when I run without an image on the
commandline. Not very elegant.
Try:
labelit.png --help
On 11/01/2013 16:34, Tim Gruene wrote:
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> Hash: SHA1
>
> Hi Nat!
>
> How recent is recent? From today's 'phenix-online.org':
> "New Phenix version 1.8.1 now available", but
>
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ labelit.png_1.8.1-1168
> DX-CORRECTIONS.cbf
> Traceback (most recent call last):
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
> line 27, in <module>
> OV = overlay_plain(infile,graphics_bin)
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/build/intel-linux-2.6-x86_64/../../labelit/command_line/png.py",
> line 6, in __init__
> OverlayDriverClass.__init__(self,infile,graphics_bin)
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/overlay_distl.py",
> line 19, in __init__
> self.I = GenericImageWorker(infile,binning=graphics_bin)
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/graphics/support.py",
> line 12, in __init__
> images = ImageFiles(imagenames,labelit_commands)
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
> line 184, in __init__
> self.filenames = FileNames(arg_module,phil_params)
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/labelit/command_line/imagefiles.py",
> line 70, in __init__
> self.interface3_parse_command()
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
> line 138, in interface3_parse_command
>
> self.interface3_FN_factory(os.path.abspath(file),error_message="File
> name not accepted")
> File
> "/xtal/Suites/Phenix/phenix-1.8.1-1168/cctbx_project/spotfinder/diffraction/imagefiles.py",
> line 127, in interface3_FN_factory
> raise Exception("Input error: "+error_message)
> Exception: Input error: File name not accepted
>
> Compared to:
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ adxv -sa
> DX-CORRECTIONS.cbf DX-CORRECTIONS.tiff
> Adxv Version 1.9.8
> Copyright (C) 1994-2011 by Andrew Arvai, Area Detector Systems Corporation
> Recognized CBF format data.
> Warning: Could not find diffrn_frame_data or diffrn_data_frame
> tg@slartibartfast:~/uni/datasets/nk/xds_run3$ identify
> DX-CORRECTIONS.tiff
> DX-CORRECTIONS.tiff TIFF 768x768 768x768+0+0 8-bit PseudoClass 256c
> 592KB 0.000u 0:00.000
>
> Cheers,
> Tim
>
> On 01/10/2013 09:59 PM, Frank von Delft wrote:
>> Brilliant - thanks Nat!! Easy to work around that feature.
>>
>> And thanks Nick!!
>>
>>
>>
>>
>> -------- Original Message -------- Subject: Re: [ccp4bb]
>> Convert cbf to png/tiff? Date: Thu, 10 Jan 2013 12:47:21 -0800
>> From: Nat Echols <[log in to unmask]> To: Frank von
>> Delft <[log in to unmask]>
>
>
>
>
>
>>
>>
>> Using any recent Phenix distribution:
>>
>> labelit.png file_name
>>
>> For reasons unknown to me, the output is named "plain.png" - I
>> will bug Nick about this.
>>
>> On Thu, Jan 10, 2013 at 12:36 PM, Frank von Delft
>> <[log in to unmask]> wrote:
>>> Hello all - anybody know an easy way to convert CBF images
>>> (Pilatus) into something lossless like tiff or png?
>>>
>>> Ideally *easy* as in r e a l l y e a s y and not requiring
>>> extensive installation of dependencies and stuff. Because then I
>>> might as well write my own stuff using cbflib and PIL in python.
>>>
>>> Thanks! phx
>>
>>
>>
> - --
> - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
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