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Ok, thanks, I will check this out too. Is this function also implemented in orthoview? Would be a great tool for an image viewer: click somewhere into a spatial cluster (not necessarily a stats output) and have it written out as a .nii file. Best, Michel > Date: Tue, 27 Nov 2012 11:51:37 -0500 > Subject: Re: [SPM] Extract clusters from binary mask > From: [log in to unmask] > To: [log in to unmask] > CC: [log in to unmask] > > My peak_nii toolbox will also provide you with the information you > want. I expect to add a few more features in the coming weeks - > including the center of binary clusters and probability of a cluster > being in a given anatomical region. > > Best Regards, Donald McLaren > ================= > D.G. McLaren, Ph.D. > Research Fellow, Department of Neurology, Massachusetts General Hospital and > Harvard Medical School > Postdoctoral Research Fellow, GRECC, Bedford VA > Website: http://www.martinos.org/~mclaren > Office: (773) 406-2464 > ===================== > This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED > HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is > intended only for the use of the individual or entity named above. If the > reader of the e-mail is not the intended recipient or the employee or agent > responsible for delivering it to the intended recipient, you are hereby > notified that you are in possession of confidential and privileged > information. Any unauthorized use, disclosure, copying or the taking of any > action in reliance on the contents of this information is strictly > prohibited and may be unlawful. If you have received this e-mail > unintentionally, please immediately notify the sender via telephone at (773) > 406-2464 or email. > > > On Tue, Nov 27, 2012 at 6:36 AM, Michel Grothe <[log in to unmask]> wrote: > > Dear SPMers, > > > > does anyone know a simple/automatic way to isolate spatially separate clusters from a binary mask? > > XJview for example allows you to isolate single clusters from T-maps, but it doesn't work in my case of a binary mask. > > Any hints will be highly appreciated. > > > > Best, > > Michel