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It may be that your SGE queues are not setup to allow the randomise to complete in time - ask your local IT admin to have a look - or maybe edit the dual_regression script to submit randomise to a longer queue…. ie change the -T 60 option near the end to something longer? Cheers. On 3 Dec 2012, at 10:39, Viola Wittstock wrote: > Dear Cornelius, > > I just found your post on SGE & randomise - it seems I have similar issue: > > I have configured a Ubuntu machine with 8 cores for SGE, so far it's working for MELODIC etc. > > However, when I ran the dual_regression script on this local cluster, the analysis does not finish - I do get dr_stage3 results only for two ICs (IC0014 and IC0015 out of 15 ICs). The dr_stage2 is complete with all files (dr_stage2_ic00xx for all ICs). When I look at the drD.o files, then randomise seems not to finish (randomise does not finish the permutations). > > Did you come up with a solution to this? > > Cheers > Viola > --------------------------------------------------------------------------- Stephen M. Smith, Professor of Biomedical Engineering Associate Director, Oxford University FMRIB Centre FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK +44 (0) 1865 222726 (fax 222717) [log in to unmask] http://www.fmrib.ox.ac.uk/~steve ---------------------------------------------------------------------------