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Dear McLaren,

I have changed the high-pass to 240 but the result is the same.
The data I used is from Buckner et al. "Functional Brain Imaging of Young, Nondemented, and Demented Older Adults" and I expect the visual and motor areas are active. In this paper does not mention in detail the time and block. If you have time, please check it for me.
Thank you very much,
Best regards,
Michael Bui

On Thu, Nov 8, 2012 at 1:30 AM, MCLAREN, Donald <[log in to unmask]> wrote:
Model and contrasts look fine; however, I'd change the high-pass to 240.

The other things that I would look at are:
(1) Using an uncorrected threshold to look at a single subject. You
don't have that many blocks;
(2) Make sure the timing is correct.
(3) Find a ROI/voxel you expect to be active and see if you can see
the response following a block pattern.

In your design, do you expect the neurons to be on for 21 seconds?

Best Regards, Donald McLaren
=================
D.G. McLaren, Ph.D.
Research Fellow, Department of Neurology, Massachusetts General Hospital and
Harvard Medical School
Postdoctoral Research Fellow, GRECC, Bedford VA
Website: http://www.martinos.org/~mclaren
Office: (773) 406-2464
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On Wed, Nov 7, 2012 at 1:16 PM, Michael Bui <[log in to unmask]> wrote:
> Dear McLaren,
>
> Here I attached the pdf file contain the design matrix and contrast, please
> check it for me.
>
> Thank you very much,
> Best regards,
> Michael Bui
>
>
> On Thu, Nov 8, 2012 at 12:51 AM, MCLAREN, Donald <[log in to unmask]>
> wrote:
>>
>> Can you send me the design matrix and contrast.
>>
>> Best Regards, Donald McLaren
>> =================
>> D.G. McLaren, Ph.D.
>> Research Fellow, Department of Neurology, Massachusetts General Hospital
>> and
>> Harvard Medical School
>> Postdoctoral Research Fellow, GRECC, Bedford VA
>> Website: http://www.martinos.org/~mclaren
>> Office: (773) 406-2464
>> =====================
>> This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED
>> HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is
>> intended only for the use of the individual or entity named above. If the
>> reader of the e-mail is not the intended recipient or the employee or
>> agent
>> responsible for delivering it to the intended recipient, you are hereby
>> notified that you are in possession of confidential and privileged
>> information. Any unauthorized use, disclosure, copying or the taking of
>> any
>> action in reliance on the contents of this information is strictly
>> prohibited and may be unlawful. If you have received this e-mail
>> unintentionally, please immediately notify the sender via telephone at
>> (773)
>> 406-2464 or email.
>>
>>
>> On Wed, Nov 7, 2012 at 12:49 PM, Michael Bui <[log in to unmask]> wrote:
>> > Dear McLaren,
>> > Thank you for your suggestion, do you mean the duration is the length of
>> > stimulus (in this case every eight-image acquisition (21.44sec) the
>> > stimulus
>> > is changed). I have tried the duration to 21.44sec but they do not have
>> > response.
>> >
>> > Please help me to solve this problem,
>> > Best regards,
>> > Michael Bui
>> >
>> > On Thu, Nov 8, 2012 at 12:36 AM, MCLAREN, Donald
>> > <[log in to unmask]>
>> > wrote:
>> >>
>> >> You need to specify a duration unless your using FIR, in which case
>> >> you need to specify the length of the window to look for the response.
>> >> The default duration is 0, so it will look for very short blips in
>> >> your timecourse.
>> >>
>> >> Best Regards, Donald McLaren
>> >> =================
>> >> D.G. McLaren, Ph.D.
>> >> Research Fellow, Department of Neurology, Massachusetts General
>> >> Hospital
>> >> and
>> >> Harvard Medical School
>> >> Postdoctoral Research Fellow, GRECC, Bedford VA
>> >> Website: http://www.martinos.org/~mclaren
>> >> Office: (773) 406-2464
>> >> =====================
>> >> This e-mail contains CONFIDENTIAL INFORMATION which may contain
>> >> PROTECTED
>> >> HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is
>> >> intended only for the use of the individual or entity named above. If
>> >> the
>> >> reader of the e-mail is not the intended recipient or the employee or
>> >> agent
>> >> responsible for delivering it to the intended recipient, you are hereby
>> >> notified that you are in possession of confidential and privileged
>> >> information. Any unauthorized use, disclosure, copying or the taking of
>> >> any
>> >> action in reliance on the contents of this information is strictly
>> >> prohibited and may be unlawful. If you have received this e-mail
>> >> unintentionally, please immediately notify the sender via telephone at
>> >> (773)
>> >> 406-2464 or email.
>> >>
>> >>
>> >> On Wed, Nov 7, 2012 at 12:33 PM, Michael Bui <[log in to unmask]> wrote:
>> >> > Dear SPM experts,
>> >> >
>> >> > Please help me to plot the activation map. I have 128 smoothed fMRI,
>> >> > 16
>> >> > slices/volume, TR = 2.68 and stimuli is:
>> >> > Time Onset
>> >> > 10    0
>> >> > 30    0
>> >> > 50    1
>> >> > 70    0
>> >> > 90    0
>> >> > 110    1
>> >> > 130    1
>> >> > 150    0
>> >> > 170    1
>> >> > 190    0
>> >> > 210    0
>> >> > 230    1
>> >> > 250    1
>> >> > 270    0
>> >> > 290    1
>> >> >
>> >> > I used "Specify 1st-level" and choose "Onsets" values as "50 110 170
>> >> > 230
>> >> > 250
>> >> > 290". Then I follow the prompt of SPM8, estimate and inference,
>> >> > accept
>> >> > the
>> >> > default p-value (0.05), FWE but the result has no activation in the
>> >> > brain.
>> >> > Could you please give me any suggestion to produce the activation
>> >> > map?
>> >> >
>> >> > Thank you very much for your help,
>> >> > With best wishes,
>> >> > Michael Bui
>> >
>> >
>
>