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Set the origin and rotation to match the template. The origin should be at the AC. Best Regards, Donald McLaren ================= D.G. McLaren, Ph.D. Research Fellow, Department of Neurology, Massachusetts General Hospital and Harvard Medical School Postdoctoral Research Fellow, GRECC, Bedford VA Website: http://www.martinos.org/~mclaren Office: (773) 406-2464 ===================== This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is intended only for the use of the individual or entity named above. If the reader of the e-mail is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that you are in possession of confidential and privileged information. Any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited and may be unlawful. If you have received this e-mail unintentionally, please immediately notify the sender via telephone at (773) 406-2464 or email. On Thu, Nov 22, 2012 at 7:53 PM, SUBSCRIBE SPM Palermo <[log in to unmask]> wrote: > Hello all > Relative beginner to SPM and fMRI in general. One participant's activation is quite considerably off the atlas. The preprocessed T1 images seem to be falsely aligned. How can I reorient all T1 and activation images to match the templates? > Any help is greatly appreciated.