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Thank you very much!!! 在 2012-11-21，下午4:25，Jesper Andersson <[log in to unmask]> 写道： > Dear Ai, > >> I did it again as what you said. >> 1) First I register MPRAGE(1mm) to MNI_152_2mm, and I got a blurry image. Just like the following >> >> <屏幕快照 2012-11-21 上午11.21.18.png> >> >> 2) then resample the above image the following command: >> applywarp -i MPR_fnirt -r /usr/local/fsl/data/standard/MNI152_T1_1mm -o MPR_fnirt_1mm --premat=MPR_brain_flirt.mat >> >> But I got an not complete image, the following: >> >> <屏幕快照 2012-11-21 上午11.27.15.png> > > you should not resample the image twice. All you need to do is > > applwarp --in=my_original_ima --ref=/usr/local/fsl/data/standard/MNI152_T1_1mm --warp=my_fnirt_warps --out=MPR_fnirt_1mm > > Try that and I think that will solve things. > > And also, if at all possible, please don't include figures into emails that goes to the entire list. > > Jesper > >> >>> Dear Edwardai, >>> >>>> The thickness of MPRAGE is 1mm. Should I register them to MNI152_T1_2mm or MNI152_T1_1mm? Which is better? >>> >>> the space you want to end up in depends on what you will ultimately use your data for. If the purpose is to register EPI data for group-level analysis then 2mm is enough. If you want to do detailed anatomical analysis you may want to go to 1mm. >>> >>>> >>>> I know there is a configuration file of FNIRT(register to MNI152_T1_2mm) in FSL. Is there a configuration file about registeration to MNI152_T1_1mm? >>> >>> I mostly recommend registering to the 2mm template (using the usual configuration file) and then resampling to the 1mm template with applywarp. >>> >>> Good luck Jesper >>