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Here you are Gwenaëlle. Thanks for looking into this. Daniel On Tue, Nov 20, 2012 at 12:17 PM, Gwenaëlle DOUAUD <[log in to unmask] > wrote: > Hi Daniel, > > could you please give me exactly the output for an 'ls -al' in your vbm > home directory, an 'ls -al struc/fslvbm2c*', 'ls -al > struc/*_struc_GM_to_T.*' as well as a 'more template_list'? > > Cheers, > Gwenaëlle > > -------------------------------------------------------------------- > Gwenaëlle Douaud, PhD > FMRIB Centre, University of Oxford > John Radcliffe Hospital, Headington > OX3 9DU Oxford UK > Tel: +44 (0) 1865 222 523 > Fax: +44 (0) 1865 222 717 > www.fmrib.ox.ac.uk/~douaud > -------------------------------------------------------------------- > ------------------------------ > *De :* Daniel Cole <[log in to unmask]> > *À :* [log in to unmask] > *Envoyé le :* Mardi 20 novembre 2012 14h56 > *Objet :* [FSL] fslvbm_2_template - not reading struc_GM_to_T > > Hello FSLers, > > I am rerunning template creation for VBM on Macaque monkeys. However my > fslvbm_2_template contains an error in the "fslvbm2c.e70552" file. Here is > the error message: > > (directories removed) > "** ERROR (nifti_image_read): failed to find header file for > '.../.../num_19_20110923_struc_GM_to_T' > ** ERROR: nifti_image_open(.../.../num_19_20110923_struc_GM_to_T): bad > header info > ERROR: failed to open file .../... > /19_20_test/num_19_20110923_struc_GM_to_T > Cannot open volume .../.../19_20_test/num_19_20110923_struc_GM_to_T for > reading! > ** ERROR (nifti_image_read): failed to find header file for > 'template_4D_GM' > ** ERROR: nifti_image_open(template_4D_GM): bad header info > ERROR: failed to open file template_4D_GM > Cannot open volume template_4D_GM for reading! > ** ERROR (nifti_image_read): failed to find header file for 'template_GM' > ** ERROR: nifti_image_open(template_GM): bad header info > ERROR: failed to open file template_GM > ERROR: Could not open file" > > I find this error message particularly strange since the > "num_19_20110923_struc_GM_to_T" .mat and .nii.gz files exist. This is the > first file in my template_list (which I will upload) so for some reason the > first call is failing and causing the others to fail as well. My > template_list is the same as it was before when I had the template creation > step working and is in my base fslvbm directory. > > Any hints or suggestions would be much appreciated, > Daniel > > > -- > Daniel Cole > University of Rochester > Brain and Cognitive Sciences > [log in to unmask] > > > > -- Daniel Cole University of Rochester Brain and Cognitive Sciences [log in to unmask]