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Dear Mark,

Yes, that is right with respect to the command line, i.e., supply the "-f
design.fts" to run the F-contrasts and, if you'd like cluster-level
inference, also include the -F and/or -S options.

With respect to the repeated measurements, check the randomise webpage for
examples.

All the best!

Anderson



2012/11/27 Mark <[log in to unmask]>

> Hi,
>
> I've set up a repeated-measures anova in GLM (5 t contrasts and 3 f
> contrasts) and I want to do a small volumn correction by randomise in a
> mask. I enter the directory of cope.feat and use filtered_func_data as the
> input. If I run
>
> randomise -i filtered_func_data.nii.gz -o output_name -d design.mat -t
> design.con -m mask.nii.gz -T -c 2.3
>
> There will be only output of the statistics of 5 t contrasts (tstst1~5).
> But what I want is those of f contrasts. So should I use the one below or
> other command?
>
> randomise -i filtered_func_data.nii.gz -o output_name -d design.mat -t
> design.con -f design.fts -m mask.nii.gz -T -c 2.3
>
> Thanks.
>
> Mark
>