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Also - please can you tell us the full name of the file and the full pathname of the folder you're working in - it would probably be worth running fslerrorreport in a terminal after moving into the folder (directory) containing the input data.

Cheers.


On 23 Oct 2012, at 23:36, Mark Jenkinson wrote:

Hi,

I can't see anything obviously wrong here.
Can you please upload the data to us using our upload site (see the website section on "support" for the instructions on how to do this).

All the best,
Mark


On 22 Oct 2012, at 22:42, Jeni Chen <[log in to unmask]> wrote:

Hello Mark,

The image looks OK in FSLview, and the header info is:

sizeof_hdr     348
data_type      INT16
dim0           4
dim1           74
dim2           74
dim3           49
dim4           151
dim5           1
dim6           1
dim7           1
vox_units      mm
time_units     s
datatype       4
nbyper         2
bitpix         16
pixdim0        0.0000000000
pixdim1        2.9729728699
pixdim2        2.9729728699
pixdim3        3.0000000000
pixdim4        3.0000000000
pixdim5        1.0000000000
pixdim6        1.0000000000
pixdim7        56863.8281250000
vox_offset     352
cal_max        0.0000
cal_min        0.0000
scl_slope      1.000000
scl_inter      0.000000
phase_dim      0
freq_dim       0
slice_dim      0
slice_name     Unknown
slice_code     0
slice_start    0
slice_end      0
slice_duration 0.000000
time_offset    0.000000
intent         Unknown
intent_code    0
intent_name    
intent_p1      0.000000
intent_p2      0.000000
intent_p3      0.000000
qform_name     Scanner Anat
qform_code     1
qto_xyz:1      -2.972973  0.000000  -0.000000  108.200882
qto_xyz:2      0.000000  2.932200  -0.495143  -79.521835
qto_xyz:3      0.000000  0.490682  2.958857  -41.488293
qto_xyz:4      0.000000  0.000000  0.000000  1.000000
qform_xorient  Right-to-Left
qform_yorient  Posterior-to-Anterior
qform_zorient  Inferior-to-Superior
sform_name     Scanner Anat
sform_code     1
sto_xyz:1      -2.972973  0.000000  0.000000  108.200882
sto_xyz:2      0.000000  2.932200  -0.495143  -79.521835
sto_xyz:3      0.000000  0.490682  2.958857  -41.488293
sto_xyz:4      0.000000  0.000000  0.000000  1.000000
sform_xorient  Right-to-Left
sform_yorient  Posterior-to-Anterior
sform_zorient  Inferior-to-Superior
file_type      NIFTI-1+
file_code      1
descrip        
aux_file


Thanks.

Jeni




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Stephen M. Smith, Professor of Biomedical Engineering
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