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Thanks Mark, the reference is 334189 (two T1s). Rolf On 12 October 2012 15:52, Mark Jenkinson <[log in to unmask]> wrote: > Dear Rolf, > > This tool is a beta version, so not quite so heavily tested yet. > However, the code explicitly takes care of variable amounts of space in the superior direction - this is precisely what it is designed to do. Therefore if you are having trouble it is probably not due to the amount of space but due to something else. Can you upload an example so that we can test it? > > All the best, > Mark > > > > On 12 Oct 2012, at 14:38, Rolf Heckemann <[log in to unmask]> wrote: > >> I've been experimenting with robustfov. It works well in general >> removing excess neck, but occasionally it cuts too high and discards >> parts of the cerebellum/brainstem/occipital lobe. In at least one >> instance, it appears that this was due to the original FOV extending >> excessively in the superior direction as well as inferiorly. Perhaps >> this possibility (essentially too much air in the image above the >> head) should be considered in the script itself or in fsl_anat. >> >> Thanks >> >> Rolf Heckemann >> >> >> -- >> Rolf A Heckemann, MD PhD >> Médecin chercheur, Fondation Neurodis >> CERMEP - Imagerie du Vivant >> Hôpital Neurologique Pierre Wertheimer >> 59 Boulevard Pinel >> 69003 Lyon >> France >> >> 2nd affiliation: Honorary Fellow, Imperial College London >> -- Rolf A Heckemann, MD PhD Médecin chercheur, Fondation Neurodis CERMEP - Imagerie du Vivant Hôpital Neurologique Pierre Wertheimer 59 Boulevard Pinel 69003 Lyon France 2nd affiliation: Honorary Fellow, Imperial College London