Hi,
I recommend trying to install from the tar file rather than using the installer in this case.
Go to the bottom of the download page (after section 5, there is a section entitled "Advanced users").
Select the Linux 64-bit CentOS version and download this. Then go to the "installation instructions"
(the link at the end of section 5).
This was the way that all FSL downloads worked (except Debian-based platforms) until this release and it is not too difficult to do.
All the best,
Mark
On 12 Sep 2012, at 12:19, Nucleos P <[log in to unmask]> wrote:
> Hi,
>
> We are still having errors when trying to install FSL 5.0 on the centos redhat version 6.2 system. Anyone else having problems?
> The error says "the os is not supported."
>
> Please help! We would love to start running analyses on the new version :)
>
> Thanks!!
>
> On Tue, Sep 11, 2012 at 6:51 PM, Michael Krause <[log in to unmask]> wrote:
> I stumbled over this problem as well and found some bugs in the function configure_matlab()
> Here is a tiny patch that probably fixes three issues:
>
> + create_file boolean is actually a global function name -> rename
> + mlines should be set in all cases
> + create startup.m even when path to startup.m exists
>
>
> --- /dev/null 2012-09-12 00:11:05.816554589 +0200
> +++ fslinstaller.py 2012-09-12 00:12:34.252269031 +0200
> @@ -1050,15 +1050,15 @@
> return FslIResult(False, FslIResult.ERROR, 'Unknown shell')
> return add_to_file(self.profile, fsl_env, False)
>
> - def configure_matlab(self, m_startup='', create_file=True):
> + def configure_matlab(self, m_startup='', createfile=True):
> '''Setup your startup.m file to enable FSL MATLAB functions to work'''
> from os import path, getenv, mkdir
>
> if m_startup == '':
> m_startup = '/'.join((getenv('HOME'), 'matlab', 'startup.m'))
> + mlines = self.lines['startup.m']
> if path.exists(m_startup):
> # Check if already configured
> - mlines = self.lines['startup.m']
> match = file_contains_1stline(mlines[0], m_startup)
> MsgUser.debug(match)
> if match == '':
> @@ -1072,14 +1072,14 @@
> else:
> MsgUser.debug('MATLAB already configured.')
> result = FslIResult(True, FslIResult.WARN, "MATLAB already configured.")
> - elif create_file:
> + elif createfile:
> # No startup.m file found. Create one
> try:
> MsgUser.debug('No MATLAB startup.m file found, creating one.')
> if not path.isdir( path.dirname(m_startup)):
> MsgUser.debug('No MATLAB startup.m file found, creating one.')
> mkdir(path.dirname(m_startup))
> - result = create_file(m_startup, mlines)
> + result = create_file(m_startup, mlines)
> except OSError:
> MsgUser.debug('Unable to create ~/matlab folder, cannot configure.')
> result = FslIResult(False, FslIResult.ERROR, "Unable to create your ~/matlab folder, so cannot configure MATLAB for FSL.")
>
