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HI Sandy,
      There is one over here :
http://www.hindawi.com/journals/ari/2011/287860/
Maybe it will help you (after following the references) design a method for
your specific case.
Sid.

On Sun, Sep 23, 2012 at 12:10 PM, Sandy Weser <[log in to unmask]> wrote:

> Not sure if the body posted. here it is again:
>
> Hi,
>
> I am trying to co-register a 2D image from a brain histology slice to a 3D
> T1-weighted MPRAGE structural MRI. Both are from the same subject.
>
> The brain slice image looks like this:
> https://www.dropbox.com/s/1llyge0zih5bio1/brain_slice.jpg
>
> Does anyone know of a program that already does this in some way? Any
> pointers to the problem would be much appreciated.
>
> The registration would probably have to involve more DOF than rigid-body,
> since the tissue tends to shrink when put in the conservation solution
> before the photograph is taken.
>
> Thanks,
> Sandy
>