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Hi all,

I have a problem related to data publication and citation and I wonder
if anyone on this list could provide advice.

MalariaGEN (the project I work for) is generating data on genetic
variation in parasite populations in different parts of the world. We
recently published a paper [1] accompanied by a dataset [2] which
comprises a catalog of genetic variations (SNPs) with allele
frequencies found in different populations.

We'd like to provide advice to others using the SNP catalog dataset on
how the dataset should be cited. Because this dataset accompanies a
peer-reviewed paper, we are just advising people to cite the paper
(i.e., "Manske, Miotto et al., blah blah"). This fairly standard
practice I think for citing data that accompanies a published paper,
and means that the authors will get recognition for anyone citing the
data.

The problem we have is that MalariaGEN project is ongoing, and the
recent paper [1] is just a snapshot of work in progress. Since that
paper we've analysed many more samples, and have new findings to
report. We will write a new paper at some point, but at best we'll be
publishing a paper once a year. In the interim, we'd like to publish
updates to the SNP catalog dataset, perhaps every 3 months or so.

So for those "in between" datasets that do not accompany a full paper,
how would you recommend that we publish them?

Obviously we could put them on www.malariagen.net, and tell people to
cite some www.malariagen.net URL. But I guess our concerns with this
approach are that (a) our website is probably not a long-term archive,
(b) we'd have to think about persistent URLs, and (c) the citation
being just a URL would not get picked up by citation tracking services
and so MalariaGEN wouldn't get any visible credit for anyone citing
these data.

I was hoping for some sort of data journal that allowed us to publish
super-lightweight data papers that are basically an abstract, some
metadata, and the dataset itself, and then gave us a DOI or some other
persistent and trackable means of citation. But I couldn't find
anything appropriate.

Any thoughts?

Cheers,

Alistair

[1] http://eorder.sheridan.com/3_0/display/index.php?flashprint=1866
[2] http://explorercat.sanger.ac.uk/ExplorerCat-pgv/pub/executePlugin.action?pluginName=PopGen+Explorer&selectedCatalogId=1

-- 
Alistair Miles
Head of Epidemiological Informatics
Centre for Genomics and Global Health <http://cggh.org>
The Wellcome Trust Centre for Human Genetics
Roosevelt Drive
Oxford
OX3 7BN
United Kingdom
Web: http://purl.org/net/aliman
Email: [log in to unmask]
Tel: +44 (0)1865 287538