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Hi Mark, Thanks a lot for the help. Catherine ________________________________ From: Mark Jenkinson <[log in to unmask]> To: [log in to unmask] Sent: Tuesday, August 28, 2012 1:56 PM Subject: Re: [FSL] Overlay results on structural template Hi, I misunderstood what you wanted, as I thought you wanted to view things on the structural image of an individual, not the standard template image (MNI). To do the latter you just need to follow Christian's advice - use the ApplyXFM GUI, pick the identity transformation, and use the existing volume option, choosing either the 2mm or 1mm standard space template image (MNI). That should do what you want. All the best, Mark On 28 Aug 2012, at 19:04, Rongxiang Tang <[log in to unmask]> wrote: Hi Mark, > >Thanks for the reply. I looked at Christian's reply and realized that the statistical results are in MNI space... >So in this case, do I still need to derived the registrations? > >Thanks, >Catherine > > > > > > >________________________________ > From: Mark Jenkinson <[log in to unmask]> >To: [log in to unmask] >Sent: Tuesday, August 28, 2012 12:25 AM >Subject: Re: [FSL] Overlay results on structural template > > >Hi, > > >If you mean that you used a statistical image as an input image to drive a registration, then this will never work. >You need to run a registration using an image that shows anatomy (the example_func or highres or standard). >Once you have derived the registrations from these then you can apply it to any other image (e.g. statistical ones) to move them between spaces. If you already have a registration from your structural to the standard (which you should) then you just need to apply the inverse of this to shift your statistical results to the structural space. See the documentation, the FSL course and other posts for help on this. > > >All the best, >Mark > > > > >On 28 Aug 2012, at 00:09, Rongxiang Tang <[log in to unmask]> wrote: > >Dear All, >> >> >>I tried to overlay my dual regression results in FSLview on a structural image...(i.e. avg152T1). However, it notifies me that the dimensions don't match. So I run a FLIRT linear registration using avg152T1 as reference and my tstats image as input.... >> >> >>It worked well with the tfce_p_tstats, but not with the tstats files.... please see the attachment for details... >> >> >>Thanks, >>Catherine > > >