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Ok thank you, Is there any particular patch I should download (I am using Centos06)? On Mon, Aug 20, 2012 at 7:14 PM, Saad Jbabdi <[log in to unmask]> wrote: > Hi -Step 2 describes how to create a label file from a volume file. If you have a volume segmentation of ventricles you can use that step to transform it to a label file. > Note: I would recommend using probtrackx2 (http://www.fmrib.ox.ac.uk/fsldownloads/patches/) as it makes using surfaces easier. > > Cheers > Saad > > > On 17 Aug 2012, at 02:06, Alistair Perry wrote: > >> Thank you, it works perfectly now. >> >> The documentation is also missing for step 2, when I want to create a text file that contains labels of vertices on a surface. You don't perhaps have the command for this too. >> > > -- > Saad Jbabdi > University of Oxford, FMRIB Centre > > JR Hospital, Headington, OX3 9DU, UK > (+44)1865-222466 (fax 717) > www.fmrib.ox.ac.uk/~saad >