 |
 |
Thank you very much!!Giuseppe > Date: Wed, 25 Jul 2012 22:49:11 +0100 > From: [log in to unmask] > Subject: Re: [FSL] seeds_to_target visualization > To: [log in to unmask] > > Hi Giuseppe > The seed-to-target option will only give you a map of the seed mask that counts how many streamlines reach each target from each voxel. > It does not produce separate streamline histograms for separate targets. > In order to do that, you need to re-run probtrackx with your targets as waypoint/exclusion masks as appropriate. > Then the resulting fdt_paths will be specific to each target. You can visualise there in fslview (the 3D mode might interest you if you want to get an idea of the pathway shape in 3D). > > Cheers > Saad > > On 25 Jul 2012, at 14:15, Giuseppe wrote: > > > Hi Experts, > > i have just run a classification target analysis and i would like to know if there is a way to visualize, with fsl or any other software, the seeds_to_target masks in a way in which i can see the actual streamlines that go from a specific part of my seeding mask to the target. I would like to represent graphically my findings for presentation purposes but i did not find the way to do that unfortunately. > > It could be a very naive question but any suggestions would be really appreciated. > > Thanks a lot, > > Giuseppe > > > > > > > > -- > Saad Jbabdi > University of Oxford, FMRIB Centre > > JR Hospital, Headington, OX3 9DU, UK > (+44)1865-222466 (fax 717) > www.fmrib.ox.ac.uk/~saad