Hi,
I have tried running this batch script built in the GUI - almost identical to one the one Guillaume posted previously but I am getting an error..
(I have tried this using both the spm8 and the spm12 I have installed on my system - same error)
(swuSub003_0010-ep2d_bold_mocoOff-200-rest-0005.nii is the first file of my session)
(the centre coordinates I used was a random coordinate within the anatomical mask I created using the anatomy toolbox)
SPM BATCH:
matlabbatch{1}.spm.util.voi.spmmat = {'C:\Users\jkahan\Documents\MATLAB\Resting_state\resting_state\Sub003\SPM.mat'};
matlabbatch{1}.spm.util.voi.adjust = NaN;
matlabbatch{1}.spm.util.voi.session = 1;
matlabbatch{1}.spm.util.voi.name = 'm1_test';
matlabbatch{1}.spm.util.voi.roi{1}.spm.spmmat = {''};
matlabbatch{1}.spm.util.voi.roi{1}.spm.contrast = 1;
matlabbatch{1}.spm.util.voi.roi{1}.spm.conjunction = 1;
matlabbatch{1}.spm.util.voi.roi{1}.spm.threshdesc = 'none';
matlabbatch{1}.spm.util.voi.roi{1}.spm.thresh = 0.05;
matlabbatch{1}.spm.util.voi.roi{1}.spm.extent = 0;
matlabbatch{1}.spm.util.voi.roi{1}.spm.mask = struct('contrast', {}, 'thresh', {}, 'mtype', {});
matlabbatch{1}.spm.util.voi.roi{2}.mask.image = {'C:\Users\jkahan\Documents\MATLAB\ROI_m1_4a4p_right_MNI.img,1'};
matlabbatch{1}.spm.util.voi.roi{2}.mask.threshold = 0.5;
matlabbatch{1}.spm.util.voi.roi{3}.sphere.centre = [8 -36 77];
matlabbatch{1}.spm.util.voi.roi{3}.sphere.radius = 5;
matlabbatch{1}.spm.util.voi.roi{3}.sphere.move.global.spm = 1;
matlabbatch{1}.spm.util.voi.roi{3}.sphere.move.global.mask = 'i2';
matlabbatch{1}.spm.util.voi.expression = 'i1 & i3';
MATLAB:
------------------------------------------------------------------------
Running job #1
------------------------------------------------------------------------
Running 'Volume of Interest'
## Note: this VOI facility is in a beta version. ##
## Interface and features might change in the future. ##
SPM computation : ...done
SPM computation : ...done
Sphere centre moved to global maxima [ 48 -6 30]
Error with file swuSub003_0010-ep2d_bold_mocoOff-200-rest-0005.nii
Failed 'Volume of Interest'
Error using spm_sample_vol
Cant open image file.
In file "C:\Users\jkahan\Documents\MATLAB\spm8\spm_get_data.m" (v3950), function "spm_get_data" at line 44.
In file "C:\Users\jkahan\Documents\MATLAB\spm8\spm_regions.m" (v4513), function "spm_regions" at line 142.
In file "C:\Users\jkahan\Documents\MATLAB\spm8\config\spm_run_voi.m" (v4269), function "spm_run_voi" at line 69.
The following modules did not run:
Failed: Volume of Interest
