If you open the structures in Chimera, the "measure rotation" command will report the transformation matrix as well as the screw axis and shift/rotation along/around the screw axis needed.  There are also options to that command for actually depicting the screw axis and/or rotation.

www.cgl.ucsf.edu/chimera
www.cgl.ucsf.edu/chimera/current/docs/UsersGuide/midas/measure.html

--Eric

                        Eric Pettersen
                        UCSF Computer Graphics Lab
                        http://www.cgl.ucsf.edu

On Jun 22, 2012, at 4:00 PM, Jeremy Tame wrote:

Yes, LSQKAB does, but not the equivalent screw axis (which exists by Chasles theorem). I think a screw
axis may well be the best way to describe the rigid body movement which began the thread. A simple
distance and angle (2 numbers) are easier to understand, and often of more biological relevance, than
RT matrices, for example in the case of relative domain motions.

On Jun 20, 2012, at 5:20 PM, Mark J van Raaij wrote:

LSQKAB ("superpose" in CCP4i GUI) also outputs in its log-file the translation parameters and rotation matrix it used to superpose the structure.