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Hi, nothing to worry about, eye.mat is just an identity transformation, a 4x4 unit matrix. It is created at the end of bedpostx and used by a bedpostx monitor to detect whether process has completely successfully. You can do cat eye.mat in one of the directories that contain it and see its contents. Cheers Stam On 11 Apr 2012, at 21:37, andrew Persichetti wrote: > What exactly is the eye.mat file in the xfms directory? After runnig fdt registration, I have the six .mat files created by the registration, but I noticed that some of my subjects are now missing the eye.mat file in the xfms directory. Is this an important file? Do I need to / Can I reobtain it easily? Thanks! > > Best, > Andrew >