Dear all,
I hope someone can help me with FSL because FEEDS failed:
christina@ubuntu:~/Desktop/feeds$ /usr/bin/time ./RUN all
FSL Evaluation and Example Data Suite v4.1.9
Warning - FSL version (4.1.4) not the same as this test
suite version (4.1.9)! Therefore this test may
not run...maybe you should download the latest version of
the test suite and/or FSL.
start time = Do 5. Apr 13:56:40 CEST 2012
hostname = ubuntu
os = Linux ubuntu 2.6.32-38-generic #83-Ubuntu SMP Wed Jan 4 11:13:04 UTC 2012 i686 GNU/Linux
/bin/rm -rf /home/christina/Desktop/feeds/results ; mkdir /home/christina/Desktop/feeds/results
Starting PRELUDE & FUGUE at Do 5. Apr 13:56:40 CEST 2012
% error = 0.0
% error = 0.0
Starting SUSAN at Do 5. Apr 13:56:43 CEST 2012
% error = 0.03
Starting SIENAX (including testing BET and FLIRT and FAST) at Do 5. Apr 14:01:40 CEST 2012
checking error on BET:
% error = 0.0
checking error on FLIRT:
No output image created
Warning - test failed!
checking error on FAST:
checking error on single-image binary segmentation:
No output image created
Warning - test failed!
checking error on partial volume images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on SIENAX volume outputs:
% error = 42.5
Warning - test failed!
% error = 2.65
Warning - test failed!
% error = 53.06
Warning - test failed!
% error = 42.64
Warning - test failed!
% error = 95.71
Warning - test failed!
Starting BET2 at Do 5. Apr 14:02:42 CEST 2012
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
Starting FEAT at Do 5. Apr 14:13:52 CEST 2012
checking error on filtered functional data:
% error = 0.12
checking error on raw Z stat images:
% error = 0.31
% error = 0.19
% error = 0.26
checking error on thresholded Z stat images:
% error = 0.42
% error = 0.35
% error = 0.35
checking error on registration images:
% error = 0.0
No output image created
Warning - test failed!
checking error on position of largest cluster of Talairached zfstat1:
couldn't open "/home/christina/Desktop/feeds/results/fmri.feat/cluster_zfstat1_std.txt": no such file or directory
while executing
"open ${FEEDSDIR}/results/fmri.feat/cluster_zfstat1_std.txt r "
invoked from within
"if { $feeds(feat) } {
puts "\nStarting FEAT at [ exec date ]"
# fix FEAT setup file to use FEEDSDIR and FSLDIR
fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
(file "./RUN" line 285)
Command exited with non-zero status 1
1694.84user 19.56system 30:10.97elapsed 94%CPU (0avgtext+0avgdata 1587872maxresident)k
421184inputs+685184outputs (1082major+4143065minor)pagefaults 0swaps
