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The command line in my previous email (found below) is from your website, my actual command line and the error message that appears is as follows:


macbook-air-3:~ volumetry$ cd desktop
macbook-air-3:desktop volumetry$ cd vbm-t1dm
iain-wilkinsons-macbook-air-3:vbm-t1dm volumetry$ for g in HV115047.nii.gz HV115053.nii.gz HV115059.nii.gz HV115158.nii.gz HV115397.nii.gz HV115658.nii.gz HV115665.nii.gz HV116122.nii.gz HV116137.nii.gz HV116999.nii.gz HV118436.nii.gz HV119832.nii.gz HV119875.nii.gz \ NN115427.nii.gz NN115667.nii.gz NN117211.nii.gz NN117930.nii.gz NN117946.nii.gz NN118162.nii.gz NN118326.nii.gz NN118568.nii.gz NN118627.nii.gz NN119206.nii.gz NN120800.nii.gz NN120862.nii.gz NN121186.nii.gz \ P114320.nii.gz P114467.nii.gz P114547.nii.gz P114609.nii.gz P115013.nii.gz P115259.nii.gz P117214.nii.gz P117585.nii.gz P119627.nii.gz P119733.nii.gz P119873.nii.gz P121192.nii.gz P121317.nii.gz \ UP115148.nii.gz UP115394.nii.gz UP115413.nii.gz UP115523.nii.gz UP117318.nii.gz UP117410.nii.gz UP118102.nii.gz UP118117.nii.gz UP118128.nii.gz UP118318.nii.gz UP118872.nii.gz UP118887.nii.gz UP119867.nii.gz; do
> echo $g
> 
> template_list
> done
HV115047.nii.gz
-bash: template_list: command not found
HV115053.nii.gz
-bash: template_list: command not found
HV115059.nii.gz
-bash: template_list: command not found
HV115158.nii.gz
-bash: template_list: command not found
HV115397.nii.gz
-bash: template_list: command not found
HV115658.nii.gz
-bash: template_list: command not found
HV115665.nii.gz
-bash: template_list: command not found
HV116122.nii.gz
-bash: template_list: command not found
HV116137.nii.gz
-bash: template_list: command not found
HV116999.nii.gz
-bash: template_list: command not found
HV118436.nii.gz
-bash: template_list: command not found
HV119832.nii.gz
-bash: template_list: command not found
HV119875.nii.gz
-bash: template_list: command not found
NN115427.nii.gz
-bash: template_list: command not found
NN115667.nii.gz
-bash: template_list: command not found
NN117211.nii.gz
-bash: template_list: command not found
NN117930.nii.gz
-bash: template_list: command not found
NN117946.nii.gz
-bash: template_list: command not found
NN118162.nii.gz
-bash: template_list: command not found
NN118326.nii.gz
-bash: template_list: command not found
NN118568.nii.gz
-bash: template_list: command not found
NN118627.nii.gz
-bash: template_list: command not found
NN119206.nii.gz
-bash: template_list: command not found
NN120800.nii.gz
-bash: template_list: command not found
NN120862.nii.gz
-bash: template_list: command not found
NN121186.nii.gz
-bash: template_list: command not found
P114320.nii.gz
-bash: template_list: command not found
P114467.nii.gz
-bash: template_list: command not found
P114547.nii.gz
-bash: template_list: command not found
P114609.nii.gz
-bash: template_list: command not found
P115013.nii.gz
-bash: template_list: command not found
P115259.nii.gz
-bash: template_list: command not found
P117214.nii.gz
-bash: template_list: command not found
P117585.nii.gz
-bash: template_list: command not found
P119627.nii.gz
-bash: template_list: command not found
P119733.nii.gz
-bash: template_list: command not found 
P119873.nii.gz
-bash: template_list: command not found
P121192.nii.gz
-bash: template_list: command not found
P121317.nii.gz
-bash: template_list: command not found
UP115148.nii.gz
-bash: template_list: command not found
UP115394.nii.gz
-bash: template_list: command not found
UP115413.nii.gz
-bash: template_list: command not found
UP115523.nii.gz
-bash: template_list: command not found
UP117318.nii.gz
-bash: template_list: command not found
UP117410.nii.gz
-bash: template_list: command not found
UP118102.nii.gz
-bash: template_list: command not found
UP118117.nii.gz
-bash: template_list: command not found
UP118128.nii.gz
-bash: template_list: command not found
UP118318.nii.gz
-bash: template_list: command not found
UP118872.nii.gz
-bash: template_list: command not found
UP118887.nii.gz
-bash: template_list: command not found
UP119867.nii.gz
-bash: template_list: command not found
macbook-air-3:vbm-t1dm volumetry$ 



I have tried it without the backslahes as suggested but it makes no difference. Please help
 
Thank you for your time

Michael Maxwell


On 23 April 2012 14:13, Paul Robinson <[log in to unmask]> wrote:
 
Hi, Michael.

Is the backslash part of your list, or are you just showing us that the line continues? That's the only thing that doesn't look quite right to me. For a short list like this, you could also just open a text editor and out the name of each image on a separate line.

Hth,
Paul



On Monday, April 23, 2012, Michael Maxwell <[log in to unmask]> wrote:
> I'm following the instructions for VBM from your website but when entering the following command line:
 >
> for g in CON_2304.nii.gz CON_2878.nii.gz CON_3456.nii.gz CON_4133.nii.gz CON_4690.nii.gz \
>  PAT_2042.nii.gz PAT_2632.nii.gz PAT_3193.nii.gz PAT_4134.nii.gz PAT_6659.nii.gz; do
> echo $g >> template_list
 > done
>
> it tells me:
>
> -bash: template_list: command not found
>
> What should I do?
>
> Thank you
>
> Michael Maxwell
>