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Dear Michael and Silviu, thank you for your help!! - I managed to remove the partition and now there are only Windows XP and Ubuntu 10.04 (and swap) left, both systems now have about 40 GB. I also tried df -h and everything seems to be alright: Dateisystem Größe Benut Verf Ben% Eingehängt auf /dev/sda6 37G 5,4G 30G 16% / none 240M 280K 240M 1% /dev none 245M 312K 244M 1% /dev/shm none 245M 84K 245M 1% /var/run none 245M 0 245M 0% /var/lock none 245M 0 245M 0% /lib/init/rw I also downloaded feeds the way you explained it and FAST still fails (but FIRST is alright now): Starting SIENAX (including testing BET and FLIRT and FAST) at Mo 16. Apr 22:11:09 CEST 2012 checking error on BET: % error = 0.0 checking error on FLIRT: % error = 0.03 checking error on FAST: checking error on single-image binary segmentation: No output image created Warning - test failed! checking error on partial volume images: No output image created Warning - test failed! No output image created Warning - test failed! No output image created Warning - test failed! checking error on SIENAX volume outputs: % error = 42.5 Warning - test failed! % error = 2.65 Warning - test failed! % error = 53.06 Warning - test failed! % error = 42.64 Warning - test failed! % error = 95.71 Warning - test failed! I tried again cat /tmp/fsl-selftest.7PBmFZ/results/LOG /usr/share/fsl/4.1/bin/imcp /tmp/fsl-selftest.7PBmFZ/data/structural /tmp/fsl-selftest.7PBmFZ/results/structural cd /tmp/fsl-selftest.7PBmFZ/results ; /usr/share/fsl/4.1/bin/sienax structural -d -r ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_1): bad header info ERROR: failed to open file I_stdmaskbrain_pve_1 Cannot open volume I_stdmaskbrain_pve_1 for reading! ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1_segperiph' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_1_segperiph): bad header info ERROR: failed to open file I_stdmaskbrain_pve_1_segperiph ERROR: Could not open image I_stdmaskbrain_pve_1_segperiph Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_1_segperiph dc: stack empty dc: stack empty dc: stack empty dc: stack empty ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_0' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_0): bad header info ERROR: failed to open file I_stdmaskbrain_pve_0 Cannot open volume I_stdmaskbrain_pve_0 for reading! ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_0_segvent' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_0_segvent): bad header info ERROR: failed to open file I_stdmaskbrain_pve_0_segvent ERROR: Could not open image I_stdmaskbrain_pve_0_segvent Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_0_segvent dc: stack empty dc: stack empty dc: stack empty dc: stack empty ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_1): bad header info ERROR: failed to open file I_stdmaskbrain_pve_1 ERROR: Could not open image I_stdmaskbrain_pve_1 Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_1 dc: stack empty dc: stack empty dc: stack empty dc: stack empty ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_2' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_2): bad header info ERROR: failed to open file I_stdmaskbrain_pve_2 ERROR: Could not open image I_stdmaskbrain_pve_2 Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_2 dc: stack empty dc: stack empty dc: stack empty dc: stack empty ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_seg' ** ERROR: nifti_image_open(I_stdmaskbrain_seg): bad header info ERROR: failed to open file I_stdmaskbrain_seg ERROR: Could not open image I_stdmaskbrain_seg Image Exception : #22 :: Failed to read volume I_stdmaskbrain_seg terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted ** ERROR (nifti_image_read): failed to find header file for 'I_render' ** ERROR: nifti_image_open(I_render): bad header info ERROR: failed to open file I_render ERROR: Could not open image I_render Image Exception : #22 :: Failed to read volume I_render terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted Cannot open grIa.png for reading Segmentation fault /bin/rm: Entfernen von „grI?.???“ nicht möglich: Datei oder Verzeichnis nicht gefunden ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1_segperiph' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_1_segperiph): bad header info ERROR: failed to open file I_stdmaskbrain_pve_1_segperiph ERROR: Could not open image I_stdmaskbrain_pve_1_segperiph Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_1_segperiph terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted ** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_0_segvent' ** ERROR: nifti_image_open(I_stdmaskbrain_pve_0_segvent): bad header info ERROR: failed to open file I_stdmaskbrain_pve_0_segvent ERROR: Could not open image I_stdmaskbrain_pve_0_segvent Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_0_segvent terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted ** ERROR (nifti_image_read): failed to find header file for 'I_periph_render' ** ERROR: nifti_image_open(I_periph_render): bad header info ERROR: failed to open file I_periph_render ERROR: Could not open image I_periph_render Image Exception : #22 :: Failed to read volume I_periph_render terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted Cannot open grIa.png for reading Segmentation fault ** ERROR (nifti_image_read): failed to find header file for 'I_vent_render' ** ERROR: nifti_image_open(I_vent_render): bad header info ERROR: failed to open file I_vent_render ERROR: Could not open image I_vent_render Image Exception : #22 :: Failed to read volume I_vent_render terminate called after throwing an instance of 'RBD_COMMON::BaseException' Aborted Cannot open grIa.png for reading Segmentation fault /bin/rm: Entfernen von „grI?.???“ nicht möglich: Datei oder Verzeichnis nicht gefunden Finished. The SIENAX report can be viewed by pointing your web browser at: file:/tmp/fsl-selftest.7PBmFZ/results/structural_sienax/report.html Estimated normalised brain volume (NBV) = 2.38 And then: ls -l /tmp/fsl-selftest.7PBmFZ insgesamt 4 lrwxrwxrwx 1 christina christina 25 2012-04-16 22:11 data -> /usr/share/fsl-feeds/data drwxr-xr-x 3 christina christina 4096 2012-04-16 22:22 results lrwxrwxrwx 1 christina christina 24 2012-04-16 22:11 RUN -> /usr/share/fsl-feeds/RUN ls -l /tmp/fsl-selftest.7PBmFZ/results insgesamt 13220 -rw-r--r-- 1 christina christina 36769 2012-04-16 22:22 errsq.nii.gz -rw-r--r-- 1 christina christina 5182 2012-04-16 22:22 LOG -rw-r--r-- 1 christina christina 78653 2012-04-16 22:22 meansq.nii.gz -rw-r--r-- 1 christina christina 13404884 2012-04-16 22:11 structural.nii.gz drwxr-xr-x 2 christina christina 4096 2012-04-16 22:17 structural_sienax ls -l /tmp/fsl-selftest.7PBmFZ/results/structural_sienax insgesamt 18268 -rw-r--r-- 1 christina christina 730 2012-04-16 22:16 I2std.avscale -rw-r--r-- 1 christina christina 141 2012-04-16 22:17 I2std_inv.mat -rw-r--r-- 1 christina christina 143 2012-04-16 22:16 I2std.mat -rw-r--r-- 1 christina christina 39744 2012-04-16 22:17 I2std.png -rw-r--r-- 1 christina christina 190988 2012-04-16 22:11 I_bet.png -rw-r--r-- 1 christina christina 52668 2012-04-16 22:11 I_brain_mask.nii.gz -rw-r--r-- 1 christina christina 2231783 2012-04-16 22:11 I_brain.nii.gz -rw-r--r-- 1 christina christina 87366 2012-04-16 22:11 I_brain_skull.nii.gz -rw-r--r-- 1 christina christina 225993 2012-04-16 22:17 I_masks.png -rw-r--r-- 1 christina christina 13404884 2012-04-16 22:11 I.nii.gz -rw-r--r-- 1 christina christina 2219451 2012-04-16 22:17 I_stdmaskbrain.nii.gz -rw-r--r-- 1 christina christina 78689 2012-04-16 22:17 I_stdmask.nii.gz -rw-r--r-- 1 christina christina 88150 2012-04-16 22:17 I_stdmask_segperiph.nii.gz -rw-r--r-- 1 christina christina 43023 2012-04-16 22:17 I_stdmask_segvent.nii.gz -rw-r--r-- 1 christina christina 4132 2012-04-16 22:22 report.html -rw-r--r-- 1 christina christina 905 2012-04-16 22:22 report.sienax Christina