Adrienne,

A more current location for downloading conn is:
http://www.nitrc.org/projects/conn/

Very Best!

Jim Lee

On 3/21/12, Adrienne Hezghia <[log in to unmask]> wrote:
> Hi all,
>
> I have tried to download CONN on both Mac and Windows computers, but both
> give me an error message when I try to open it.  The file appears to be
> corrupted.  Has anyone had success installing and using CONN?  I was not
> able to reach the makers of the program.
>
> Thank you,
> Adrienne
>
> On Wed, Mar 21, 2012 at 4:32 PM, soha saleh <[log in to unmask]> wrote:
>
>>  Hi:
>>
>> I believe CONN toolbox is useful for that (
>> http://web.mit.edu/swg/software.htm) . Please  update me if anybody has
>> any comments on that or has used it with resting state data.
>>
>> Best,
>>
>> Soha
>>
>>

>> ------------------------------

>> Date: Wed, 21 Mar 2012 17:09:52 -0300
>> From: [log in to unmask]
>> Subject: Re: [SPM] connectivity
>> To: [log in to unmask]
>>
>>
>> Hi,
>>
>> check this out :
>> https://sites.google.com/site/functionalconnectivitytoolbox/home
>>
>> I'm not sure where the inputs have to be the time courses of the ROIs or
>> it has tools to extract the time courses given coordinates or a mask (I've
>> never used it). If not, you will have to open your functional images
>> together with a co-registered  atlas (e.g. AAL) and extract the time
>> course
>> from each region (usually taken as the average of the time courses
>> belonging to the region).
>>
>> Once you're done with that you might also want the Brain Connectivity
>> Toolbox, which takes the F.C. matrices you generated as input. This is the
>> link:
>> https://sites.google.com/site/functionalconnectivitytoolbox/the-brain-connectivity-toolbox
>>
>> Bw,
>>
>> Enzo
>>
>> On Wed, Mar 21, 2012 at 4:46 PM, Hekmatyar <[log in to unmask]> wrote:
>>

>> Hello SPMers****

>>
>> Is there any program or gui to make correlation matrix for different
>> regions (ROIs) of brain from data acquired in average resting-state BOLD

>> time courses?****
>>
>> Thanks****
>>
>> Regards****
>>
>> ** **
>>
>> Shah****
>>
>> ** **
>>
>> ** **
>>
>> *From:* SPM (Statistical Parametric Mapping) [mailto:[log in to unmask]]
>> *On
>> Behalf Of *John Fredy
>> *Sent:* Wednesday, March 21, 2012 3:38 PM
>> *To:* [log in to unmask]
>> *Subject:* Re: [SPM] resting state in older patients****
>>
>> ** **
>>
>> Thanks for the reply****
>>
>> ** **

>>
>> My process consist of: slice time correction, realignment, corregister of
>> functional with structural, smooth, normalization and use of the PICA
>> algorithm in the MELODIC software. Using that process pipeline I obtain

>> good results in different subjects from different populations. ****
>>
>> ** **
>>
>> The realign process don't show significant movement****
>>
>> ** **
>>
>> For this case I am processing a single subject,****
>>
>> ** **
>>
>> I will try use the seed method****
>>
>> ** **
>>
>> Thanks again to all for the reply****
>>
>> ** **
>>
>> John Ochoa****
>>
>> Bioingeniería****
>>
>> Universidad de Antioquia****
>>
>> ** **

>>
>> On Wed, Mar 21, 2012 at 11:32 AM, Enzo Tagliazucchi <[log in to unmask]>

>> wrote:****

>>
>> Hi,
>>
>> which method are you using? from my experience the "canonial" RSNs may be
>> sometimes hard to identify if you use PICA. If you just want to check
>> whether a particular RSN is on the data or not then I'd suggest seed
>> correlation, which has stronger assumptions (ROI selection) but it is more
>> likely to give you a nicer map for the RSN under study
>>
>> Bw,
>>

>> Enzo****
>>
>> ** **

>>
>> On Wed, Mar 21, 2012 at 2:44 PM, John Fredy <[log in to unmask]> wrote:

>> ****

>>
>> Hello all,
>>
>> I have a set of data from patients with ages around the 65 years. The data
>> was adquired with the patients in resting following the same protocol that
>> gave good results in youger patients. In the older patients I can't see
>> the
>> canonical networks, this could be for changes related with the age?, Exist
>> any aditional consideration when processing data from older patients?
>>
>> Thanks in advance
>>
>> John Ochoa
>> Bioingeniería

>> Universidad de Antioquia****
>>
>> ** **
>>
>> ** **
>>
>>
>>
>
>
> --
> *Adrienne Hezghia*

> Neuroscience and Behavior, BA
> Columbia University
>