Here is the correct link: http://www.martinos.org/~mclaren/ftp/Utilities_DGM/
The current version is PEAK_10122011.tar.gz
Let me
On Tuesday, March 13, 2012, Laura Tully <[log in to unmask]> wrote:
> Sounds like a fantastic tool! But, the link appears to be broken?
> Laura.
>
> On Tue, Mar 13, 2012 at 11:50 AM, MCLAREN, Donald <[log in to unmask]> wrote:
>>
>> My peak_nii tool can be scripted. It saves out the thresholded images. It also saves out the clusters and peaks and subsequently labels all the peaks as well. In the next release, it will also provide the corrected statistics (FWE/FDR) at both the voxel and cluster level.
>>
>> http://www.martinos.org/~mclaren/Utilities_DGM
>>
>> Best Regards, Donald McLaren
>> =================
>> D.G. McLaren, Ph.D.
>> Postdoctoral Research Fellow, GRECC, Bedford VA
>> Research Fellow, Department of Neurology, Massachusetts General Hospital and
>> Harvard Medical School
>> Website: http://www.martinos.org/~mclaren
>> Office: (773) 406-2464
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>>
>> On Tue, Mar 13, 2012 at 11:24 AM, Aaron Oliver-Taylor <[log in to unmask]> wrote:
>>>
>>> Hello,
>>> I was wondering if anyone could tell me how to batch/automatically/programatically save the activation maps for each contrast during standard fMRI analysis. This would manually be achieved by going to the results window, selecting spm.mat, selecting the contrast, clicking save and entering a filename. I have a batch job which handles all of the other aspects of processing, and is similar to the batch job example in the spm 8 manual.
>>> Many thanks,
>>> Aaron
>>> __________________________________________
>>> Aaron Oliver-Taylor
>>> Ph.D Student
>>> The Advanced Magnetic Resonance Imaging Group
>>> Department of Medical Physics and Bioengineering
>>> University College London
>>> [log in to unmask]
>>>
>>
>
>
>
> --
> Laura Tully
> Social Neuroscience & Psychopathology
> Harvard University
> 840 William James Hall
> 33 Kirkland St
> Cambridge, MA 02138
> [log in to unmask]
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>
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