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Hi In this case you might as well sue the Feat GUI to do preprocessing only. If you want to stick with melodic for preprocessing then check out the final call to group melodic in the log file. The input file to melodic (.filelist somewhere) contains a list of all the preprocessed and coregistered files, including their location on your system hth Christian On 13 Mar 2012, at 13:56, Adi Maron-Katz wrote: > Hello, > > I am using Melodic to preprocess my resting state fMRI data. > I do not wish to perform ICA (am I using the right tool?) > I would like to extract the preprocessed fMRI data that is generated after data coregistration to MNI space is performed. > Is there an nii file (or any other file) that is generated in the process that I can use? > > Thanks in advance > Adi