Hello Rasmus,
Wayne has already sent me the corrected file so it's all sorted.
Thank you for your help.
cheers,
diego
On 03/28/2012 02:27 PM, Rasmus Fogh wrote:
> Dear Diego,
>
> Did you look inthe file
> /dms/home/desposi/nmr/tombunney/figures/spectra/individual_spectra/ccp/nmr/Nmr/defaultProject+defaultProject_desposi_2011-08-04-15-30-14-992_00001.xml
> ?
>
> Can you tell what it says in line 4106, column 19, if there is
> anything unusual there? This might be a truncated file.
>
> Yours,
>
> Rasmus
>
> ---------------------------------------------------------------------------
>
> Dr. Rasmus H. Fogh Email: [log in to unmask]
> Dept. of Biochemistry, University of Cambridge,
> 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
>
> On Wed, 28 Mar 2012, Diego Esposito wrote:
>
>> does anyone know how to sort this error?
>>
>> Error loading file for: <ccp.nmr.Nmr.NmrProject ['defaultProject']>
>> Reading: <open file '/dms/home/desposi/nmr/tombunney/figures/spectra/
> individual_spectra/ccp/nmr/Nmr/defaultProject+defaultProject_desposi_2011-08-04-15-30-14-992_00001.xml',
> mode 'r' at 0xcdb9f98>
>> Last xml tag read: NMR.ExpDim.expDimRefs
>> Parser state was: reading
>> Current object was: []
>> Traceback (most recent call last):
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccpnmr/analysis/AnalysisGui.py",
>> line 226, in <module>
>> main(projectDir, max_size, glDirect)
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccpnmr/analysis/AnalysisGui.py",
>> line 102, in main
>> project = loadProject(top, path=projectDir)
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccp/gui/Io.py", line
>> 92, in loadProject
>> if isinstance(dataStore, NumericMatrix) and not
>> dataStore.nmrDataSources:
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccp/api/general/DataLocation.py",
>> line 6134, in getNmrDataSources
>> tobj.load()
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/api/Implementation.py",
>> line 5030, in load
>> self.loadFrom(repositories[0])
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/api/Implementation.py",
>> line 5064, in loadFrom
>> XmlIO.loadTopObject(repository.url.getDataLocation(), self)
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/format/xml/XmlIO.py",
>> line 236, in loadTopObject
>> return loadFromStream(open(filePath), topObjId=topObjId,
>> topObject=topObject)
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/format/xml/XmlIO.py",
>> line 267, in loadFromStream
>> partialLoad=partialLoad)
>> File
>> "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/xml/Implementation.py",
>> line 4338, in loadFromStream
>> for event, elem in ElementTree.iterparse(stream, events=("start",
>> "end")):
>> File "<string>", line 64, in __iter__
>> SyntaxError: not well-formed (invalid token): line 4106, column 19
>>
>
