Re: [ccp4bb] a question about protein sequences in the PDB
The total model that fits the observable electron density should be the standard for the PDB FASTA file with the deposited structure factors, however, not all depositions contain a link to the expression construct details because many are not published, and I believe that it should be explicitly detailed in the submission.
Chad
On 3/26/12 7:54 PM, "Francois Berenger" <[log in to unmask]">[log in to unmask]> wrote:
Dear list,
If I take all the fasta files for proteins in the PDB,
are the sequences complete?
I mean, do they have holes sometimes (missing amino acids)?
Sorry for the maybe stupid question but I know that sometimes
the PDB files have missing residues, I am hoping that
it is not the case with the FASTA files.
Regards,
Francois.
***************************
Chad R. Simmons
Researcher
Biodesign Institute
at Arizona State University
P.O. Box 875601
Tempe, AZ 85287
Office: (480) 727-6495
Lab: (480) 727-0428
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