Dear Crystal,<br>My experience suggests using ANTS and FA to T1.<br>Best,<br>Nagesh<br><br><div class="gmail_quote">On Tue, Feb 7, 2012 at 3:52 PM, Franklin, Crystal G <span dir="ltr">&lt;<a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1202%26L%3DFSL%26E%3Dquoted-printable%26P%3D1137731%26B%3D--e89a8f2355890e104904b86857a0%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br>
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<div>Dear FSL,</div>
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<div>I am trying to register my subject&#39;s T1 (voxel dimensions of .8x.8x.8) to their DTI (voxel dimensions of 1.719x1.719x3).  Unfortunately I do not have a T2 image or field maps.  Do you suggest using the FA image or the b0?  I have tried using both in flirt.
  The registration looks pretty good until I get around the ventricles.  What is the best way to go about correcting this misalignment or the best procedure for registering the T1 to DTI?</div>
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<div>Thank you,</div>
<div>Crystal</div>
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