I would like to use fsl_motion_outliers on fMRI data.
The format suggestions is: fsl_motion_outliers <unfiltered 4D image> <number of dummy scans> <output confound file>
I would like to input one data.nii.gz file and output a text file that can work as additional confounds in the feat analysis panel. I am not able to get a return output. Just a message in the terminal about the number and location of spikes.
I attempted:
fsl_motion_outliers data.nii.gz output.txt
that doesn't seem to return anything.
How do I get this in a form that is usable as confounds for feat analysis?
Thanks so much
