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Thanks so much everyone!! On Wed, Jan 25, 2012 at 3:05 PM, Angela Favaro <[log in to unmask]>wrote: > Dear Leslie, > > this is the command I use to combine an atlas_mask with an > allbrain_skeletonised_mask > > fslmaths mymask -mas uncinate mymask_uncinate > > this is the commands I use to extract FA values: > > > fslstats -t all_FA_skeletonised -k mymask_uncinate -M > > hope it helps > Angela > > > > I have a simple question! > > > > how does one extract average FA values from individual subject files (i > > assume I would get it from dti_FA.nii.gz). Also, can I choose specific > > areas to mask and extract and compare individual subject average FA > > values? > > > > THanks so much! > > >