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Hi Sreetama, you can use STRAP for that: http://3d-alignment.eu/. It allows you to do multible sequence alignments and use various algorithms to predict secondary structure or display secondary structure assignments of PDB entries. Cheers Florian Am 30.01.2012 um 11:02 schrieb sreetama das: > Dear All, > Is there any module in CCP4/ other related software/servers which can show a multiple alignment of homologous sequences from a protein family, together with their secondary structures? > Thanks in advance, > regards, > sreetama ------------------------------------------------------------- Dr. Florian Brückner Biomolecular Research Laboratory OFLG/102 Paul Scherrer Institut CH-5232 Villigen PSI Switzerland Tel.: +41-(0)56-310-2332 Email: [log in to unmask]