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Hi,

Were the first level analyses run with the same version of FSL that you're currently trying to use?  If not, preprocessing and all stages of the analysis should be run using the same version of the software.  If my memory is correct older versions of FSL were much more sensitive to having the feat directories moved around.

Maybe somebody else has a better idea, but the fastest solution may be to redo the first levels.

Jeanette

On Mon, Dec 5, 2011 at 12:12 PM, Adam Green <[log in to unmask]> wrote:
Hi Steve,

Here is the text that did not come through in the previous message (only the attachment came through).  Thanks. 

Yes, a missing file seems likely.  The feat script that lives in /usr/bin/fsl/bin/fsl calls the design.mat file on line 571 (bolded in the attached file for ease of reference).  There is a design.mat file in the /usr/bin/fsl/bin/fsl directory.  I am having trouble deciphering whether this is where the script is expecting the file to be.

Also, the task being carried out by line of the script that is referenced in the error message (line 199, also bolded) is not clear to me.  I would very much appreciate if you could take a look at the attached script and provide some guidance.  I apologize for what is surely a pedantic question.

Kind regards and sincere thanks.

On Mon, Dec 5, 2011 at 1:07 PM, Terry <[log in to unmask]> wrote:
Hi Steve,

Yes, a missing file seems likely.  The feat script that lives in /usr/bin/fsl/bin/fsl calls the design.mat file on line 571 (bolded in the attached file for ease of reference).  There is a design.mat file in the /usr/bin/fsl/bin/fsl directory.  I am having trouble deciphering whether this is where the script is expecting the file to be.

Also, the task being carried out by line of the script that is referenced in the error message (line 199, also bolded) is not clear to me.  I would very much appreciate if you could take a look at the attached script and provide some guidance.  I apologize for what is surely a pedantic question.

Kind regards and sincere thanks.