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Hi Antonella,

 

From this command you wrote, you will have the t-map as well.  Look at the folder.  It should have files named tbss_tstats...  Depends on your contrasts ...

 

For eg, if you have two contrasts (1,2), you will see six files after you run: randomise -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d design.mat -t design.con -n 5000 --T2 -V

tbss_tfce_corrp_tstat1.nii.gz  -- corrected p value

 

you can use following command lines to get the significant t map:

steps

(1) fslmaths tbss_tfce_corrp_tstat1.nii.gz -thr 0.95 tbss_tfce_corrp_tstat1_th95

(2) fslmaths tbss_tstat1.nii.gz -mas tbss_tfce_corrp_tstat1_th95 tbss_tstat1_masked

 

If you want to know the x,y,z for your corrected map.

(3) cluster -i tbss_tfce_corrp_tstat1.nii.gz -t 0.95 --mm

 

Hope these are helpful to you.

Cheers,

Yingying

 

 

>>> antonella torok <[log in to unmask]> 11/3/2011 4:44 PM >>>

Dear FSL experts,

Is theer a way to get the t statistics values in significant clusters from my TFCE results? For TFCE I was using the following command: design_ttest2 design 30 32

randomise -i all_FA_skeletonised -o tbss -m mean_FA_skeleton_mask -d design.mat -t design.con -n 5000 --T2 -V

Thank you for your time and your valuable support.

Best regards,
Claudia