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Dear Jacob,

for NH4+, you would expect a (partial) tetrahedral coordination with 
typical H-bond distances of ~2.9 A. For Na+, you would expect a 
(partial) octahedral coordination with Metal-to-ligand distances of ~2.4 
A (see Harding, Acta Cryst., D62, 678-682 (2006); Harding, Acta Cryst., 
D58, 872-874 (2002); Glusker, Advances in Protein Chemistry, 42, 1-76 
(1991)).
But depending on your data resolution and quality, and on the 
completeness of the coordination sphere, it might be difficult to 
distinguish between them.

Best regards,

Dirk.

Am 16.11.11 19:20, schrieb Jacob Keller:
> Dear Crystallographers,
>
> I have crystals containing 666mM NH4 and 540mM Na, and there appears
> to be a "water" which is only about 2.2 Ang from some polar atoms. It
> is currently reasonably happy as a Na, but is there any reasonable way
> to decide which cation is there?
>
> JPK
>

-- 

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Dirk Kostrewa
Gene Center Munich, A5.07
Department of Biochemistry
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