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The issue you raised on Tuesday--it seemed to me that you wanted to change where the output was being redirected, with the -o option. If this is the case, then OutDirMode must be set to 2. You were saying your input was at ~/Desktop (which stands for: /home/<username>/Desktop) the other day. Today you posted that your input is at /Users/anna/Desktop. Check for any errors in the input filepath. ________________________________________ From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Anna Matejko [[log in to unmask]] Sent: Thursday, October 27, 2011 1:13 PM To: [log in to unmask] Subject: Re: [FSL] Philips Par/Rec Files and Gradient tables Hi again, Yes, I did download the latest version (April 4, 2011). However now I appear to have a new error message. It appears not to be able to find the files, even though they are most certainly there. I have double checked the dcm2nii.ini file and everything seems to be ok? idholloway:parrec anna$ /Users/anna/Desktop/mricronmac/dcm2nii /Users/anna/Desktop/parrec Chris Rorden's dcm2nii :: April 4 2011 reading preferences file /Users/anna/.dcm2nii/dcm2nii.ini Data will be exported to /Users/anna/Desktop/parrec Validating 23 potential DICOM images. Unable to find any DICOM files in the path /Users/anna/Desktop/parrec/1222_2.par dcm2nii.ini [BOOL] DebugMode=0 UntestedFeatures=0 Verbose=0 Anonymize=1 AnonymizeSourceDICOM=0 AppendAcqSeries=0 AppendDate=0 AppendFilename=0 AppendPatientName=0 AppendProtocolName=0 AutoCrop=0 CollapseFolders=1 createoutputfolder=0 CustomRename=0 enablereorient=1 OrthoFlipXDim=0 EveryFile=1 fourD=1 Gzip=1 ManualNIfTIConv=1 PhilipsPrecise=0 RecursiveUseNameAppend=0 SingleNIIFile=1 SPM2=0 Stack3DImagesWithSameAcqNum=0 Swizzle4D=1 UseGE_0021_104F=0 [INT] MaxReorientMatrix=1023 MinReorientMatrix=200 RecursiveFolderDepth=5 OutDirMode=0 SiemensDTIUse0019If00181020atleast=15 SiemensDTINoAngulationCorrectionIf00181020atleast=1000 SiemensDTIStackIf00181020atleast=15 [STR] OutDir=/Users/anna/ The information in this transmission is intended for official use of the Kessler Foundation. It is intended for the exclusive use of the persons or entities to which it is addressed. If you are not an intended recipient or the employee or agent responsible for delivering this transmission to an intended recipient, be aware that any disclosure, dissemination, distribution or copying of this communication, or the use of its contents, is strictly prohibited. If you received this transmission in error, please notify the sender by return e-mail and delete the material from any computer.