Thank you very much, Steve.<div><br></div><div>This time it ran about 10s, and generate mask, maskAll files and 135 files in scripts+logs/, no nifti file, no error message, but executable drB with &#39;failed to find maskAll&#39; error message.</div>
<div><br></div><div>Do you know what happened? Any debug methods for it? I am using Mac machine, is that a problem? Do I need to use latest version 4.1.8?</div><div><br></div><div>Hai </div><div><br></div><div><br><br><div class="gmail_quote">
On Fri, Oct 21, 2011 at 1:13 PM, Stephen Smith <span dir="ltr">&lt;<a href="mailto:[log in to unmask]"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1110%26L%3DFSL%26E%3Dquoted-printable%26P%3D2274312%26B%3D--0016e644d094feb94904afd2ce09%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;">
<div style="word-wrap:break-word"><div>` not  &#39;</div><div><div></div><div class="h5"><div><br></div><div><br></div><br><div><div>On 21 Oct 2011, at 18:11, Hai Pan wrote:</div><br><blockquote type="cite">Thank you, Steve.<div>
<br></div><div>If I input as below:</div><div><div>~/apps/FSL/fsl/bin/dual_regression vol0006.nii.gz 1 Ctr+Mod.mat Ctr+Mod.con 500 CMout &#39;cat ../.filelist&#39;</div><div>The error message is:</div>
<div>/Users/haipan/apps/FSL/fsl/bin/dual_regression: line 56: [: too many arguments</div><div><br></div><div>Any suggests? Please.</div><div><br></div><div>Hai</div><br><div class="gmail_quote">On Fri, Oct 21, 2011 at 12:56 PM, Stephen Smith <span dir="ltr">&lt;<a href="mailto:[log in to unmask]" target="_blank"><a href="/cgi-bin/wa-jisc.exe?LOGON=A3%3Dind1110%26L%3DFSL%26E%3Dquoted-printable%26P%3D2274312%26B%3D--0016e644d094feb94904afd2ce09%26T%3Dtext%252Fhtml%3B%2520charset%3DISO-8859-1%26pending%3D" target="_parent" >[log in to unmask]</a></a>&gt;</span> wrote:<br>

<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">did you put the back-quotes in at the end?<div>Cheers</div><div><br></div><div><div>

<div></div><div><br><div><div>On 21 Oct 2011, at 17:51, Hai Pan wrote:</div><br><blockquote type="cite">Hello, dual_regression experts:<div><br></div><div>This is the first time I am using dual_regression. I want to compare DMN between controls and patients. Following the DR instructions, I input as below:</div>

<div><div> ~/apps/FSL/fsl/bin/dual_regression vol0006.nii.gz 1 Ctr+Mod.mat Ctr+Mod.con 5000 CMout cat ../.filelist</div>
<div><br></div><div>DR was running for less than 1s and gave online output as below without error message and correct results:</div><div>creating common mask</div><div>doing the dual regressions</div><div>sorting maps and running randomise</div>


</div><div><br></div><div>Output fold scripts+logs/ has some drA.(B, C, D) files and an executable drB file. When I ran it, it gave error message as:</div><div>Error: failed to open file CMout/maskALL</div><div><br></div>


<div>Any hints and suggestions would be very appreciated about this issue.</div><div><br></div><div>Hai </div><div><br></div>
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<br>---------------------------------------------------------------------------<br>Stephen M. Smith, Professor of Biomedical Engineering<br>Associate Director,  Oxford University FMRIB Centre<br><br>FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK<br>
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