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how do i put a protein molecule inside a cube with x-axis spanning till the
largest x-coordinate, y-axis spanning till the largest y-coordinate, and z-axis
spanning till the largest z-coordinate?
Once i do this, can i divide the larger cube(i.e. the one holding the entire
protein) into smaller ones of lesser dimensions? Say, 5A x 5A x 5A?
Once i generate these smaller cubes, is there a way via pymol, by which i can
navigate through the protein molecule, (smaller)cube by (smaller)cube?
As in, can pymol be used to tell me which residues are lying in which (smaller)
cube and so on?
Can all this be done in a single pymol window/script?
please let me know.
Thanks
-Anasuya