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Adam, I do know how to use sfall atmmap Eleanor On 10/05/2011 02:40 PM, Ian Tickle wrote: > Adam, sorry I don't use overlapmap, for the reasons you mention (and many > others!). In fact I decided it was in such a mess that it was irrecoverable > & so I wrote my own program EDSTATS to do all all these electron density > stats (and more). I talked about it at the last CSW ( > http://www.cse.scitech.ac.uk/events/CCP4_2011/talks/tickle.pdf), and > submitted it to CCP4 in January but it doesn't seem to have made the latest > release yet (or even the pre-release), so at the moment I'm just > distributing it to anyone who's interested. > > Cheers > > -- Ian > > On Wed, Oct 5, 2011 at 12:31 PM, Adam Ralph<[log in to unmask]>wrote: > >> Hi Ian, >> >> Yes I agree. The whole program is a bit of a mess and could do with some >> updating. >> I am not an official CCP4 maintainer any more but I might send them >> something. Do you >> know how to use SFALL ATMMAP? I tired to test overlapmap's residue >> correlation but did >> not work properly. >> >> Adam >> >> >> >> ----- Original Message ----- >> From: "Ian Tickle"<[log in to unmask]> >> To: "Adam Ralph"<[log in to unmask]> >> Cc: [log in to unmask] >> Sent: Wednesday, 5 October, 2011 11:36:30 AM >> Subject: Re: [ccp4bb] Overlapmap >> >> >> >> On Wed, Oct 5, 2011 at 11:03 AM, Adam Ralph< [log in to unmask]> wrote: >> >> >> >> Hi Brigitte, >> You are correct, the columns labeled Fobs and Fcal refer to density. The >> columns should be: averaged density for Obs and Cal for the main chain, then >> averaged density Obs and Cal for the side chains. I have included a version >> of overlapmap that calculates the R-factor correctly and have changed the >> above columns in the output. >> All the best Adam >> >> Documentation should be fixed too :) >> >> -- Ian >> >